FC923490

Overview
NameFC923490
Unique NameFC923490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT_FUCDI (Actin OS=Fucus distichus PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +V DNG+G  K GF G++ P +VFP +VGRP  ++   ++  + KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:    9 LVVDNGSGMCKAGF-GDDAPRAVFPSIVGRP--KHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDM 82
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT2_PLAYO (Actin-2 OS=Plasmodium yoelii yoelii GN=PY01545 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +V DNG+G VK G AG++ P  VFP ++G P  +    ++  E K+  VG  A + R  L + YP+ +GIV NW+DM
Sbjct:    8 LVVDNGSGMVKSGLAGDDAPKCVFPSIIGIP--KMPNIMVGMEQKECYVGDEAQNKRGILTLKYPIEHGIVTNWDDM 82
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT2_PLABA (Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB001050.02.0 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +V DNG+G VK G AG++ P  VFP ++G P  +    ++  E K+  VG  A + R  L + YP+ +GIV NW+DM
Sbjct:    8 LVVDNGSGMVKSGLAGDDAPKCVFPSIIGIP--KMPNIMVGMEQKECYVGDEAQNKRGILTLKYPIEHGIVTNWDDM 82
The following BLAST results are available for this feature:
BLAST of FC923490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
ACT_FUCDI9.703e-1142.86Actin OS=Fucus distichus PE=2 SV=1[more]
ACT2_PLAYO9.703e-1141.56Actin-2 OS=Plasmodium yoelii yoelii GN=PY01545 PE=... [more]
ACT2_PLABA9.703e-1141.56Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB0... [more]

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Properties
Property NameValue
Genbank descriptionC31705F04EF StrClemenN Citrus clementina cDNA clone C31705F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923490 ID=FC923490; Name=FC923490; organism=Citrus clementina; type=EST; length=394bp
GATATTTCGCGTAGCGTAACGAATACTTTGCTGCATTTAGAAGCTCCTCC
GGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCTACTAATCAGCAACAC
TCCCACTTACTCCTCCGCTTGGGCAACAGCATCACCGTGTAATGGACAAC
AGAAACGTCGTCGTTTGCGACAATGGCACTGGGTATGTCAAGTGCGGATT
CGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCATGTGTTGTGGGAAGGC
CAATGCTACGCTACGAAGAATCACTCATGGAACAAGAGCTCAAGGATACT
ATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAACTGGATGTATCTTA
TCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGATATGGGTC
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