FC923490

Overview
NameFC923490
Unique NameFC923490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDM 84
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDM 84
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDM 84
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84
[Close]
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84
The following BLAST results are available for this feature:
BLAST of FC923490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
ACT7_ARATH1.108e-1449.35Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT4_ARATH1.108e-1449.35Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT3_PEA1.108e-1449.35Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT3_ORYSJ1.108e-1449.35Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI1.108e-1449.35Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT2_ORYSJ1.108e-1449.35Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI1.108e-1449.35Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACT1_TOBAC1.108e-1449.35Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT1_SORBI1.108e-1449.35Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACT1_ORYSJ1.108e-1449.35Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705F04EF StrClemenN Citrus clementina cDNA clone C31705F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923490 ID=FC923490; Name=FC923490; organism=Citrus clementina; type=EST; length=394bp
GATATTTCGCGTAGCGTAACGAATACTTTGCTGCATTTAGAAGCTCCTCC
GGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCTACTAATCAGCAACAC
TCCCACTTACTCCTCCGCTTGGGCAACAGCATCACCGTGTAATGGACAAC
AGAAACGTCGTCGTTTGCGACAATGGCACTGGGTATGTCAAGTGCGGATT
CGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCATGTGTTGTGGGAAGGC
CAATGCTACGCTACGAAGAATCACTCATGGAACAAGAGCTCAAGGATACT
ATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAACTGGATGTATCTTA
TCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGATATGGGTC
back to top