FC923490

Overview
NameFC923490
Unique NameFC923490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT1_MAIZE (Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:    9 IVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQAKRGILTLKYPIEHGIVNNWDDM 83          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT1_HALRO (Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +++  +VCDNG+G VK GFAG++ P +VFP  VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    6 EDQTAIVCDNGSGLVKSGFAGDDAPRAVFPSTVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT1_ARATH (Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT_SCHDU (Actin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  154 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            + +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD  VG  A   R  L + YP+ +G+V NW+DM
Sbjct:    9 SALVCDNGSGMVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  154 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            + +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:    8 SALVCDNGSGMVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_ORYLA (Actin, alpha skeletal muscle OS=Oryzias latipes GN=acta1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
The following BLAST results are available for this feature:
BLAST of FC923490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
ACT1_ORYSI1.108e-1449.35Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT1_MAIZE1.108e-1449.35Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1[more]
ACT1_HALRO1.108e-1443.90Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE... [more]
ACT1_ARATH1.108e-1449.35Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=... [more]
ACT13_SOLTU1.108e-1449.35Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_ARATH1.108e-1449.35Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]
ACT11_ARATH1.108e-1449.35Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]
ACT_SCHDU1.447e-1445.57Actin OS=Scherffelia dubia PE=2 SV=1[more]
ACT_COLSC1.447e-1446.84Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACTS_ORYLA1.447e-1443.90Actin, alpha skeletal muscle OS=Oryzias latipes GN... [more]

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Properties
Property NameValue
Genbank descriptionC31705F04EF StrClemenN Citrus clementina cDNA clone C31705F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923490 ID=FC923490; Name=FC923490; organism=Citrus clementina; type=EST; length=394bp
GATATTTCGCGTAGCGTAACGAATACTTTGCTGCATTTAGAAGCTCCTCC
GGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCTACTAATCAGCAACAC
TCCCACTTACTCCTCCGCTTGGGCAACAGCATCACCGTGTAATGGACAAC
AGAAACGTCGTCGTTTGCGACAATGGCACTGGGTATGTCAAGTGCGGATT
CGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCATGTGTTGTGGGAAGGC
CAATGCTACGCTACGAAGAATCACTCATGGAACAAGAGCTCAAGGATACT
ATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAACTGGATGTATCTTA
TCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGATATGGGTC
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