FC923490

Overview
NameFC923490
Unique NameFC923490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTM_BRALA (Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD  VG  A   R  L + YPV +GIV NW+DM
Sbjct:   13 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPVEHGIVTNWDDM 87          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTM_BRAFL (Actin, muscle OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD  VG  A   R  L + YPV +GIV NW+DM
Sbjct:   11 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPVEHGIVTNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTM_BRABE (Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD  VG  A   R  L + YPV +GIV NW+DM
Sbjct:   12 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPVEHGIVTNWDDM 86          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTC_XENLA (Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN=actc1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTC_RAT (Actin, alpha cardiac muscle 1 OS=Rattus norvegicus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTC_MOUSE (Actin, alpha cardiac muscle 1 OS=Mus musculus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTC_HUMAN (Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=ACTC1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTC_CHICK (Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=ACTC1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTC_BOVIN (Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACTC1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  142 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +D+   +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L   YP+ +GIV NW+DM
Sbjct:    4 VDDIQPLVCDNGTGMVKAGFAGDDSPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTWKYPIEHGIVNNWDDM 84          
The following BLAST results are available for this feature:
BLAST of FC923490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
ACTM_BRALA1.447e-1449.35Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV... [more]
ACTM_BRAFL1.447e-1449.35Actin, muscle OS=Branchiostoma floridae PE=2 SV=1[more]
ACTM_BRABE1.447e-1449.35Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1[more]
ACTC_XENLA1.447e-1443.90Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN... [more]
ACTC_RAT1.447e-1443.90Actin, alpha cardiac muscle 1 OS=Rattus norvegicus... [more]
ACTC_MOUSE1.447e-1443.90Actin, alpha cardiac muscle 1 OS=Mus musculus GN=A... [more]
ACTC_HUMAN1.447e-1443.90Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=A... [more]
ACTC_CHICK1.447e-1443.90Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=... [more]
ACTC_BOVIN1.447e-1443.90Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACT... [more]
ACT7_SOLTU1.447e-1446.99Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31705F04EF StrClemenN Citrus clementina cDNA clone C31705F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923490 ID=FC923490; Name=FC923490; organism=Citrus clementina; type=EST; length=394bp
GATATTTCGCGTAGCGTAACGAATACTTTGCTGCATTTAGAAGCTCCTCC
GGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCTACTAATCAGCAACAC
TCCCACTTACTCCTCCGCTTGGGCAACAGCATCACCGTGTAATGGACAAC
AGAAACGTCGTCGTTTGCGACAATGGCACTGGGTATGTCAAGTGCGGATT
CGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCATGTGTTGTGGGAAGGC
CAATGCTACGCTACGAAGAATCACTCATGGAACAAGAGCTCAAGGATACT
ATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAACTGGATGTATCTTA
TCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGATATGGGTC
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