FC923490

Overview
NameFC923490
Unique NameFC923490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDXYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT2_XENTR (Actin, alpha sarcomeric/cardiac OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_CARAU (Actin, alpha skeletal muscle OS=Carassius auratus GN=acta1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:   10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPRIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT1_DAUCA (Actin-1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG  A   R  + + YP+ +GIV NW+DM
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGIITLKYPIEHGIVSNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  154 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            + +VCDNG+G VK GFAG++ P +VFP +VGRP  R+   ++    KD+ VG  A   R  L + YP+ +GIV NW+DM
Sbjct:    8 SALVCDNGSGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  154 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            + ++CDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD  VG  A   R  L + YP+ +GIV NW+DM
Sbjct:    8 SALMCDNGSGMVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT_CHLRE (Actin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  154 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            + +VCDNG+G VK GFAG++ P +VFP +VGRP  R+   ++    KD+ VG  A   R  L + YP+ +GIV NW+DM
Sbjct:    8 SALVCDNGSGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTA_RAT (Actin, aortic smooth muscle OS=Rattus norvegicus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.209e-14
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            ++   +VCDNG+G  K GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTA_RABIT (Actin, aortic smooth muscle OS=Oryctolagus cuniculus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.209e-14
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            ++   +VCDNG+G  K GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 EDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
The following BLAST results are available for this feature:
BLAST of FC923490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
ACT3_SOYBN1.447e-1449.35Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT2_XENTR1.447e-1443.90Actin, alpha sarcomeric/cardiac OS=Xenopus tropica... [more]
ACTS_CARAU1.889e-1446.75Actin, alpha skeletal muscle OS=Carassius auratus ... [more]
ACT3_SOLTU1.889e-1449.35Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT1_DAUCA1.889e-1448.05Actin-1 OS=Daucus carota PE=2 SV=1[more]
ACT_VOLCA3.223e-1446.84Actin OS=Volvox carteri PE=3 SV=1[more]
ACT_MESVI3.223e-1445.57Actin OS=Mesostigma viride PE=3 SV=1[more]
ACT_CHLRE3.223e-1446.84Actin OS=Chlamydomonas reinhardtii PE=2 SV=1[more]
ACTA_RAT4.209e-1442.68Actin, aortic smooth muscle OS=Rattus norvegicus G... [more]
ACTA_RABIT4.209e-1442.68Actin, aortic smooth muscle OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionC31705F04EF StrClemenN Citrus clementina cDNA clone C31705F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923490 ID=FC923490; Name=FC923490; organism=Citrus clementina; type=EST; length=394bp
GATATTTCGCGTAGCGTAACGAATACTTTGCTGCATTTAGAAGCTCCTCC
GGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCTACTAATCAGCAACAC
TCCCACTTACTCCTCCGCTTGGGCAACAGCATCACCGTGTAATGGACAAC
AGAAACGTCGTCGTTTGCGACAATGGCACTGGGTATGTCAAGTGCGGATT
CGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCATGTGTTGTGGGAAGGC
CAATGCTACGCTACGAAGAATCACTCATGGAACAAGAGCTCAAGGATACT
ATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAACTGGATGTATCTTA
TCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGATATGGGTC
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