FC923492

Overview
NameFC923492
Unique NameFC923492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_SCHPO (NEDD8-activating enzyme E1 catalytic subunit OS=Schizosaccharomyces pombe GN=uba3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 41/65 (63.08%), Postives = 56/65 (86.15%), Query Frame = 1
Query:  220 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            ++IL++GAGGLGCE+LKDLALSGF++L VIDMD I+++NLNRQFLF   ++ +PKA VAA  +M+
Sbjct:   45 SKILIIGAGGLGCEILKDLALSGFRDLSVIDMDTIDITNLNRQFLFNESNIDEPKANVAASMIMK 109          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: SAE2_DICDI (SUMO-activating enzyme subunit 2 OS=Dictyostelium discoideum GN=uba2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.168e-18
Identity = 41/70 (58.57%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  205 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            D  +  +ILVVGAGG+GCELLK+L L+GFKN+++ID+D I++SNLNRQFLFR + +G  KA++A   VM+
Sbjct:   18 DKIQTCKILVVGAGGIGCELLKNLVLTGFKNIDIIDLDTIDISNLNRQFLFRKQHIGMSKAKIAKESVMK 87          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: SAE2B_XENLA (SUMO-activating enzyme subunit 2-B OS=Xenopus laevis GN=uba2-B PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.698e-18
Identity = 42/65 (64.62%), Postives = 56/65 (86.15%), Query Frame = 1
Query:  220 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            +R+LVVGAGG+GCELLK+L L+GF NL+VID+D I+VSNLNRQFLF+ + VG+ KA+VA   V++
Sbjct:   18 SRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ 82          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: SAE2A_XENLA (SUMO-activating enzyme subunit 2-A OS=Xenopus laevis GN=uba2-A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.698e-18
Identity = 42/65 (64.62%), Postives = 56/65 (86.15%), Query Frame = 1
Query:  220 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            +R+LVVGAGG+GCELLK+L L+GF NL+VID+D I+VSNLNRQFLF+ + VG+ KA+VA   V++
Sbjct:   18 SRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ 82          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: SAE2_XENTR (SUMO-activating enzyme subunit 2 OS=Xenopus tropicalis GN=uba2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 42/65 (64.62%), Postives = 56/65 (86.15%), Query Frame = 1
Query:  220 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            +R+LVVGAGG+GCELLK+L L+GF NL+VID+D I+VSNLNRQFLF+ + VG+ KA+VA   V++
Sbjct:   18 SRLLVVGAGGIGCELLKNLVLTGFINLDVIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ 82          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: SAE2_MOUSE (SUMO-activating enzyme subunit 2 OS=Mus musculus GN=Uba2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.088e-17
Identity = 39/64 (60.94%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  223 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA   V++
Sbjct:   19 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ 82          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: SAE2_HUMAN (SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.088e-17
Identity = 39/64 (60.94%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  223 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA   V++
Sbjct:   19 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ 82          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA2_SCHPO (Ubiquitin-activating enzyme E1-like OS=Schizosaccharomyces pombe GN=uba2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 38/60 (63.33%), Postives = 51/60 (85.00%), Query Frame = 1
Query:  220 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 399
            A++L+VGAGG+GCELLK+L +SG K + +ID+D I++SNLNRQFLFR + V +PKA VAA
Sbjct:   26 AKVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLNRQFLFRKKHVKQPKAIVAA 85          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: SAE2_CAEEL (SUMO-activating enzyme subunit uba-2 OS=Caenorhabditis elegans GN=uba-2 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  220 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            ++ILV+GAGG+GCELLK+LA++GF+ + VID+D I++SNLNRQFLFR E V   KA  A   V +
Sbjct:   14 SKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSKAATATQVVKQ 78          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_YEAST (NEDD8-activating enzyme E1 catalytic subunit OS=Saccharomyces cerevisiae GN=UBA3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.527e-15
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 1
Query:  223 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRV 408
            +ILV+GAGGLGCE+LK+L +  F K + ++D+D IE++NLNRQFLF  +D+GKPKA+VAA  V
Sbjct:    4 KILVLGAGGLGCEILKNLTMLSFVKQVHIVDIDTIELTNLNRQFLFCDKDIGKPKAQVAAQYV 66          
The following BLAST results are available for this feature:
BLAST of FC923492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UBA3_SCHPO7.450e-1963.08NEDD8-activating enzyme E1 catalytic subunit OS=Sc... [more]
SAE2_DICDI2.168e-1858.57SUMO-activating enzyme subunit 2 OS=Dictyostelium ... [more]
SAE2B_XENLA3.698e-1864.62SUMO-activating enzyme subunit 2-B OS=Xenopus laev... [more]
SAE2A_XENLA3.698e-1864.62SUMO-activating enzyme subunit 2-A OS=Xenopus laev... [more]
SAE2_XENTR6.307e-1864.62SUMO-activating enzyme subunit 2 OS=Xenopus tropic... [more]
SAE2_MOUSE4.088e-1760.94SUMO-activating enzyme subunit 2 OS=Mus musculus G... [more]
SAE2_HUMAN4.088e-1760.94SUMO-activating enzyme subunit 2 OS=Homo sapiens G... [more]
UBA2_SCHPO1.007e-1563.33Ubiquitin-activating enzyme E1-like OS=Schizosacch... [more]
SAE2_CAEEL1.007e-1558.46SUMO-activating enzyme subunit uba-2 OS=Caenorhabd... [more]
UBA3_YEAST6.527e-1560.32NEDD8-activating enzyme E1 catalytic subunit OS=Sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705F06EF StrClemenN Citrus clementina cDNA clone C31705F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923492 ID=FC923492; Name=FC923492; organism=Citrus clementina; type=EST; length=416bp
GACAGACCCAGCGTCAAAGCCAAGCTATCAGCATATTTTCGCAACGGCTA
AATCAGAACCAAATACAGTGATAGTAAGCGAGTGTGAGAATTGTTGCAAA
TGGCTGACACGGCACCGAGCCGATCCCGAGACCTAGACAAGCTCTTACTC
CGAGCCGGTAATCTCGTGGGCCCCACTTTCGAACCCGGCGCAGAATTGAG
AGATGACTTACAAGAATATGCGCGAATTTTGGTTGTTGGAGCCGGTGGAT
TGGGCTGCGAATTGTTGAAAGACTTAGCTTTATCGGGTTTTAAAAACCTA
GAGGTCATTGATATGGACCGTATCGAAGTTTCGAATCTCAATCGCCAGTT
TCTTTTCAGGATGGAAGATGTTGGTAAGCCAAAGGCAGAGGTGGCAGCAA
GNCGTGTCATGGAGAG
back to top