FC923492

Overview
NameFC923492
Unique NameFC923492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.231e-13
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  187 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 399
            GA  ++ L+     L+VGAG +GCELLK  AL G        L V+DMD IE SNL+RQFLFR +DVG+PKAEVAA
Sbjct:  423 GAGFQEKLRRQ-HYLLVGAGAIGCELLKVFALVGLGAGNSGGLTVVDMDHIERSNLSRQFLFRSQDVGRPKAEVAA 497          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA2_YEAST (Ubiquitin-activating enzyme E1-like OS=Saccharomyces cerevisiae GN=UBA2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.581e-13
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  220 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRV 408
            +R L+VGAGG+G ELLKD+ L  F  + ++D+D I++SNLNRQFLFR +D+ +PK+  A   V
Sbjct:   22 SRCLLVGAGGIGSELLKDIILMEFGEIHIVDLDTIDLSNLNRQFLFRQKDIKQPKSTTAVKAV 84          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  187 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVM 411
            G+ L++ L+E A+I +VG+G LGCE LK+LAL G       NL V D D IE SNL+RQFLFR  ++G+PK+ VAA   M
Sbjct:  453 GSTLQNKLEE-AKIFMVGSGALGCEFLKNLALMGISCSQNGNLTVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAM 531          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  187 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVM 411
            G++L++ L+E A+I +VG+G LGCE LK+LAL G       NL + D D IE SNL+RQFLFR  ++G+PK+ VAA   M
Sbjct:  453 GSKLQNKLEE-AKIFMVGSGALGCEFLKNLALMGISCSQNGNLTLTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAM 531          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1
Query:  220 ARILVVGAGGLGCELLKDLALSGFKN-----LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRV 408
            +++ +VG+G +GCE+LK+ AL G  +     + V D D IE SNLNRQFLFR +DVGK K+EVAA  V
Sbjct:  435 SKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAV 502          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  187 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRV 408
            G+E ++ +   +  LV GAG +GCE+LK+ A+ G       ++ V DMD IE SNLNRQFLFR  DVGK K+E A+  V
Sbjct:  418 GSEFQEKIASLSTFLV-GAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAV 495          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  187 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            G++L++ L +  +  +VGAG +GCELLK+ A+ G        + V DMD IE SNLNRQFLFR  D+ K K+E AA  V +
Sbjct:  458 GSDLQEKLGKQ-KYFLVGAGAIGCELLKNFAMIGLGCGEDGEITVTDMDTIEKSNLNRQFLFRPWDITKLKSETAAAAVRD 537          
The following BLAST results are available for this feature:
BLAST of FC923492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UBA7_HUMAN1.231e-1356.58Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]
UBA2_YEAST3.581e-1352.38Ubiquitin-activating enzyme E1-like OS=Saccharomyc... [more]
UBE12_WHEAT7.979e-1352.50Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT1.042e-1251.25Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBA1_YEAST1.965e-1152.94Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]
UBA1_SCHPO1.965e-1148.10Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1Y_MOUSE7.468e-1146.91Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC31705F06EF StrClemenN Citrus clementina cDNA clone C31705F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923492 ID=FC923492; Name=FC923492; organism=Citrus clementina; type=EST; length=416bp
GACAGACCCAGCGTCAAAGCCAAGCTATCAGCATATTTTCGCAACGGCTA
AATCAGAACCAAATACAGTGATAGTAAGCGAGTGTGAGAATTGTTGCAAA
TGGCTGACACGGCACCGAGCCGATCCCGAGACCTAGACAAGCTCTTACTC
CGAGCCGGTAATCTCGTGGGCCCCACTTTCGAACCCGGCGCAGAATTGAG
AGATGACTTACAAGAATATGCGCGAATTTTGGTTGTTGGAGCCGGTGGAT
TGGGCTGCGAATTGTTGAAAGACTTAGCTTTATCGGGTTTTAAAAACCTA
GAGGTCATTGATATGGACCGTATCGAAGTTTCGAATCTCAATCGCCAGTT
TCTTTTCAGGATGGAAGATGTTGGTAAGCCAAAGGCAGAGGTGGCAGCAA
GNCGTGTCATGGAGAG
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