FC923496 | Citrus Genome Database

Overview


Name	FC923496
Unique Name	FC923496
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	709

Libraries


Library Name	Type
StrClemenN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 483
            TE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AIE MNG  L +R++ V  +  +K+ + E
Sbjct:   23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 67/219 (30.59%), Postives = 107/219 (48.86%), Query Frame = 1

Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK----GERHGTPAERILAANNP---SSQKSRPHTLFASGPPSLQN 588
            +E L +LF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +      ++      + A  NP     Q + P   F +  P  QN
Sbjct:  204 DERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418

HSP 3 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 54/159 (33.96%), Postives = 93/159 (58.49%), Query Frame = 1

Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 483
            TE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AIE MNG  L +R++ V  +  +K+ + E
Sbjct:   23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 67/219 (30.59%), Postives = 107/219 (48.86%), Query Frame = 1

Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK----GERHGTPAERILAANNP---SSQKSRPHTLFASGPPSLQN 588
            +E L +LF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +      ++      + A  NP     Q + P   F +  P  QN
Sbjct:  204 DERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418

HSP 3 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 54/159 (33.96%), Postives = 93/159 (58.49%), Query Frame = 1

Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 483
            TE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AIE MNG  L +R++ V  +  +K+ + E
Sbjct:   23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 67/219 (30.59%), Postives = 107/219 (48.86%), Query Frame = 1

Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK----GERHGTPAERILAANNP---SSQKSRPHTLFASGPPSLQN 588
            +E L +LF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +      ++      + A  NP     Q + P   F +  P  QN
Sbjct:  204 DERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418

HSP 3 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 54/159 (33.96%), Postives = 93/159 (58.49%), Query Frame = 1

Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 63/163 (38.65%), Postives = 98/163 (60.12%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 483
            TE +L+E F  AGPV+++ V +D +T    GY +V F+   DA+ A+  +N   + GKPIR+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+ F+ +++ EA+D AIE MNG  L +R++ V  +  +K+ + E
Sbjct:   23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 56/159 (35.22%), Postives = 94/159 (59.12%), Query Frame = 1

Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            L++ F   G +++  V  D   N  +GY FV F ++E AD AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   +VD++ L + FS FG  ++  K+MRDP+ G S+GFGF+SY+  E ++ A+E MNG+ +  + I V  A KK
Sbjct:  115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS-VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269

HSP 3 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 58/175 (33.14%), Postives = 95/175 (54.29%), Query Frame = 1

Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 477
            +E L ELF Q G  ++V V +D      +G+GFV +   EDA+ A++ +N  ++ GK I V +A                  Q++ S   G NL+I NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ + ++ + V+ A +K+ +
Sbjct:  204 DESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 483
            TE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AIE MNG  L +R++ V  +  +K+ + E
Sbjct:   23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAE 182

HSP 2 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 68/219 (31.05%), Postives = 107/219 (48.86%), Query Frame = 1

Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK----GERHGTPAERILAANNP---SSQKSRPHTLFASGPPSLQN 588
            +E L ELF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +      ++      + A  NP     Q + P   F +  P  QN
Sbjct:  204 DERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418

HSP 3 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 54/159 (33.96%), Postives = 93/159 (58.49%), Query Frame = 1

Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI+ +N + L  + + V +  SQ ++  ++GA      N++I N   D+D++ L + F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 60/163 (36.81%), Postives = 99/163 (60.74%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 483
            TE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AI+ MNG  L +R++ V  +  +K+ + E
Sbjct:   23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 75/246 (30.49%), Postives = 116/246 (47.15%), Query Frame = 1

Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTP--AERILAANNP----SSQKSRPHTLFASGPPSLQN--APQANGTVGGPVP-PRPYANGAASGP 663
            +E L E F Q G  ++V V  D      +G+GFV F   EDA  A+  +N   L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   F+ FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ + + H T    +R+ +   P    +  +  P + F +  P  QN  A    G +    P PR  A GA   P
Sbjct:  204 DERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-QAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHP 444

HSP 3 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 53/159 (33.33%), Postives = 90/159 (56.60%), Query Frame = 1

Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI  +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L + F  +G  ++  K+M D D G SRGFGF+S++  E +  A++ MNG+ L  + I V  A KK
Sbjct:  115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALS-VKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.797e-24
Identity = 62/151 (41.06%), Postives = 97/151 (64.24%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 450
            TE +L+E+F   GPV +V V +D +T    GY +V F ++ D   A++ LN   +  +P R+  + +D      GA N++I NLDP +D K L+DTFSAFG I+ + KI  D + GNSRGFGF+ Y+S E++++AI+ +NG  L ++++ V
Sbjct:   58 TEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQIL-SCKIATD-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFV 206

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.347e-24
Identity = 59/163 (36.20%), Postives = 99/163 (60.74%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 483
            TE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + G+P+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AI+ MNG  L +R++ V  +  +K+ + E
Sbjct:   23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 73/246 (29.67%), Postives = 117/246 (47.56%), Query Frame = 1

Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTP--AERILAANNP----SSQKSRPHTLFASGPPSLQN--APQANGTVGGPVP-PRPYANGAASGP 663
            +E L E+F + GP ++V V  D      +G+GFV F   EDA  A+  +N   + GK + V +A                  QD+ +   G NL++ NLD  +D++ L   F  FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ + + H T    +R+ +   P    +  +  P + F +  P  QN  A    G +    P PR  A GA   P
Sbjct:  204 DERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-QAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHP 444

HSP 3 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 49/159 (30.82%), Postives = 90/159 (56.60%), Query Frame = 1

Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI  +N + L  + + V +  S+ ++  ++GA      N++I N   D++++ L + F  +G  ++  K+M D D G S+GFGF+S++  E +  A++ MNG+ +  + + V  A KK
Sbjct:  115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS-VKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24
Identity = 61/157 (38.85%), Postives = 97/157 (61.78%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            TE +L+ELF   G V ++ V +D VT    GY +V + S ED + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   60 TEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL-SCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPK 214

HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 53/164 (32.32%), Postives = 87/164 (53.05%), Query Frame = 1

Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 483
            L + F   G +++  V +D + N  +GYGFV + + E A+ AIK +N + L  K + V     K  +  K  ++ AN   +++ N+D DV ++   + F   G I T+  I RD D G SRGFGF++Y   EA+  A++ +N      +++ V  A KK  + E
Sbjct:  152 LHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDI-TSASIARD-DQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREE 312

[Close]

BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 58/153 (37.91%), Postives = 93/153 (60.78%), Query Frame = 1

Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 456
            TE +L+E F  AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   + G+PIR+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   SRG+GF+ +++ EA++ AI+ MNG  L +R++ V +
Sbjct:   23 TEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC---DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172

HSP 2 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 59/165 (35.76%), Postives = 96/165 (58.18%), Query Frame = 1

Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 483
            L++ F   G +++  V  D   +  +GYGFV F ++E A+ AI+ +N + L  + + V    S+ ++ L+ GA      N++I N   D+D+K L + FSAFG  ++  K+M D DTG SRGFGF++Y + E +  A+  MNG+ +  R I V  A K+ + +GE
Sbjct:  115 LYDTFSAFGNILSCKVVCDEHGS--RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS-VKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275

HSP 3 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 51/175 (29.14%), Postives = 92/175 (52.57%), Query Frame = 1

Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 477
            ++ L E+F   G  ++V V  D  T   +G+GFV + + E+A  A+  +N  ++ G+ I V +A                  Q++ +   G NL++ NLD  +D+  L   FS +G I T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  204 DKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374

The following BLAST results are available for this feature:

BLAST of FC923496 vs. ExPASy Swiss-Prot

BLAST of FC923496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127


Match Name	E-value	Identity	Description
PABP1_PONAB	4.729e-25	37.42	Polyadenylate-binding protein 1 OS=Pongo abelii GN...	[more]
PABP1_HUMAN	4.729e-25	37.42	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	4.729e-25	37.42	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]
PABP4_HUMAN	6.176e-25	38.65	Polyadenylate-binding protein 4 OS=Homo sapiens GN...	[more]
PABP1_MOUSE	6.176e-25	37.42	Polyadenylate-binding protein 1 OS=Mus musculus GN...	[more]
PABPB_XENLA	1.053e-24	36.81	Polyadenylate-binding protein 1-B OS=Xenopus laevi...	[more]
PABP_YARLI	1.797e-24	41.06	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABPA_XENLA	2.347e-24	36.20	Polyadenylate-binding protein 1-A OS=Xenopus laevi...	[more]
PABP_PHANO	8.918e-24	38.85	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
EPAB_XENTR	1.521e-23	37.91	Embryonic polyadenylate-binding protein OS=Xenopus...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31705F10EF StrClemenN Citrus clementina cDNA clone C31705F10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC923496 ID=FC923496; Name=FC923496; organism=Citrus clementina; type=EST; length=709bp
ACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAA
TGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGAT
TTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTG
AATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCA
AGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTG
ACCCAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGA
GTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTC
TCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAG
CTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTC
TCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGC
AGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCC
ACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTCAGGCC
AATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAATGGTGC
TGCTTCAGGCCCAATTTCAGCTGTTCGACCACCACCACCACCACCACAGC
TGCAGCATT