FC923496

Overview
NameFC923496
Unique NameFC923496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 417
            L+ LF   GP+    + +D  T    GYGFV+F SE DA  AI  LN I +  K I+V+ A    + L    NL++ NL   + ++ L   F  +G IV    I+RD  TG  RG  FI ++  E +  AI A+N
Sbjct:   94 LYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLR-DTNLYVTNLSRSITDEQLETIFGKYGQIV-QKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 417
            T+  L+ LF   GP+    + KD  T    GY FV+F SE DA  AIK +N I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ ++  E +  AI A+N
Sbjct:  114 TDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDELEKIFGKYGNIV-QKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 417
            T+  L+ LF   GP+    + KD  T    GY FV+F SE DA  AIK LN + +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ ++  E +  AI A+N
Sbjct:   97 TDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDELEKIFGKYGNIV-QKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 46/157 (29.30%), Postives = 82/157 (52.23%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL----------FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429
            E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V +     ++  +   L          ++ ++ PD+ +  +   F AFG I  +  + R+P TG  +GFGFI Y+  ++S  A+ +MN     GQYL
Sbjct:   99 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKI-KSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYL 254          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 64/212 (30.19%), Postives = 95/212 (44.81%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 630
            T+  L+ LF   GP+    + +D  T    GY FV+F +E D+  AIK LN I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G+IV    I+RD  TG  RG  F+ ++  E +  AI A+N       ++ +TV  A       E HG        A +  SQ      L   G           G +GGP PP
Sbjct:  122 TDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGMIV-QKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA-------EEHGK-----AKAQHYMSQLG----LIGGGGGGGGGGGGGGGGMGGPPPP 315          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 55/182 (30.22%), Postives = 89/182 (48.90%), Query Frame = 1
Query:   22 LFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK---------------------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            LF +AG V  V V  D+++   +G+GFV   ++E+ + A +  N  ++ G+ IRVN      K                                 S+D    +++GNL   VD+  L + FS  G +V + K++ D D+G SRGFGF++Y S +  + AI+++NG  L  R I VS A ++
Sbjct:  107 LFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV-DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 63/216 (29.17%), Postives = 103/216 (47.69%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQD---KKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTV 612
            TE  + +++   G  V V + ++R T ++ GY FVEF S  +A  A+ + N      KPI       ++N AS     +KS+   +  ++F+G+L P+V+E  +Y  F++      + KIM DP T  SRG+GF+ +       +A+  M GQ   +R I V  A     K + H      ++  + P      P   +++  P  Q A  AN TV
Sbjct:  105 TEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNN------KPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA---TPKSKAHVFSPVNVVPVSMP------PVGFYSAAQPVPQFADTANSTV 305          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 47/177 (26.55%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD--------KKSLDVGAN----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKDTKGERHGT 495
            +E L + F   G V+   V  +R T+  +GYG+V+F ++  A+ AI+ +   ++ G+PI  + ++          KK  D  +     LF+GNL  + D   +++ F+  G +V+  +I   P+T   +GFG++ + + E +  A++A+ G+Y+ NR + + ++  + +  G R G+
Sbjct:  181 DEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVS-VRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGS 356          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQ-----------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 459
            T++ L  LF   G V +  + +D+V                GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +S+   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   32 TQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 195          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   91 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 477
            GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:  122 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQK 250          
The following BLAST results are available for this feature:
BLAST of FC923496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SXL_MEGSC6.406e-1437.04Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
SXL_MUSDO8.366e-1435.25Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
SXL_CHRRU8.366e-1435.25Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
PU60B_DANRE8.366e-1429.30Poly(U)-binding-splicing factor PUF60-B OS=Danio r... [more]
SXL_CERCA1.093e-1330.19Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
ROC2_NICPL1.093e-1330.2231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
YG41_SCHPO1.427e-1329.17Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
NSR1_YEAST1.864e-1326.55Nuclear localization sequence-binding protein OS=S... [more]
ELV1A_XENLA1.864e-1332.53ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
ELAV4_XENTR4.152e-1337.40ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]

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Properties
Property NameValue
Genbank descriptionC31705F10EF StrClemenN Citrus clementina cDNA clone C31705F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923496 ID=FC923496; Name=FC923496; organism=Citrus clementina; type=EST; length=709bp
ACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAA
TGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGAT
TTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTG
AATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCA
AGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTG
ACCCAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGA
GTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTC
TCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAG
CTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTC
TCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGC
AGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCC
ACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTCAGGCC
AATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAATGGTGC
TGCTTCAGGCCCAATTTCAGCTGTTCGACCACCACCACCACCACCACAGC
TGCAGCATT
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