FC923496

Overview
NameFC923496
Unique NameFC923496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 64/226 (28.32%), Postives = 98/226 (43.36%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA----SQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGP 663
            TEE L   + Q G VV+V V +D  T   +G+GF+ +      D A +    I + GK +   +A     ++ +  ++    LF+G L  + DE+ L + F  FG +V + K++ D  TG  RGF F+ +D ++A D AI          +Q  + Y +    K              N    +K +P  L  +  PSL    Q  G  GG  PP    NG    P
Sbjct:   44 TEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHI-IDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV-SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI--------LKKQHAIKYVHVDVKKS-----------IYNLDKKEKQQPGGLANAIKPSLNQQQQQQG--GGQQPP----NGNMQAP 242          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDR----VTNLHQ---------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 420
            TE+ +  LF   G + +V + +D+    +  L+          GYGFV +   +DA+ A+ VLN ++L  K I+V+ A     ++  GANL++  L   + ++ L   F+ FG I+T+  +    +   ++G GFI +D  E +  AI A+NG
Sbjct:  197 TEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDR----VTNLHQ---------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 420
            TE+ +  LF   G + +V + +D+    +  L+          GYGFV +   +DA+ A+ VLN ++L  K I+V+ A     ++  GANL++  L   + ++ L   F+ FG I+T+  +    +   ++G GFI +D  E +  AI A+NG
Sbjct:  161 TEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: RBM7_MOUSE (RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 255
            TEELL+ELF QAGPV+ V +PKD+   L Q + FV F+ E    YA+ +LN IKL+G+PI++  ++     S D   +     +GNL P
Sbjct:   22 TEELLFELFHQAGPVIKVKIPKDKDGKLKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSP 109          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  217 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 480
            DV    F+G L    D++ L + FS +G ++ + KI+ D +TG SRGFGF+++ S EA   AIEAMNGQ L  R ITV+ A  + + G
Sbjct:    3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDS-KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRSDG 89          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 53/191 (27.75%), Postives = 89/191 (46.60%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL-CNRQITVSYAYKKDTKGERHGTPAERILAA 519
            E+ +   F   GP+ ++ +  D +T  H+G+ FVE+   E A  A++ +N   + G+ I+V + S             ++ KS +    +++ ++ PD+ E+ +   F AFG I+   K+ +       +G+GFI Y + +A D AI +MN     GQ L   R IT   A    T      T A    AA
Sbjct:  143 EDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFN---RIYVASIHPDLSEEDIKSVFEAFGPIL-YCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALACPTTNSTMPTAAAVAAAA 329          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK--DTKGERHG 492
            TE+ L E+F +A    ++ +P+++     +G+ F+EF S EDA  A+   N  ++ G+ IR+  +         +        LF+  L  D  E+ L + F        N +I+ D DTG S+GFGF+ + + E + AA EAM    +   ++T+ +A  K    +G R G
Sbjct:  427 TEDSLREVFEKA---TSIRIPQNQ--GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAFDGS----VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQRGGRGG 589          
The following BLAST results are available for this feature:
BLAST of FC923496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RB97D_DROME3.515e-1228.32Ribonucleoprotein RB97D OS=Drosophila melanogaster... [more]
ELAV_DROVI5.996e-1230.07Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]
ELAV_DROME5.996e-1230.07Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
RBM7_MOUSE1.023e-1143.82RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1... [more]
GRP_HORVU1.744e-1144.32Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
PUF68_DROME5.076e-1127.75Poly(U)-binding-splicing factor half pint OS=Droso... [more]
NUCL_XENLA6.629e-1129.07Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC31705F10EF StrClemenN Citrus clementina cDNA clone C31705F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923496 ID=FC923496; Name=FC923496; organism=Citrus clementina; type=EST; length=709bp
ACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAA
TGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGAT
TTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTG
AATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCA
AGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTG
ACCCAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGA
GTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTC
TCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAG
CTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTC
TCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGC
AGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCC
ACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTCAGGCC
AATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAATGGTGC
TGCTTCAGGCCCAATTTCAGCTGTTCGACCACCACCACCACCACCACAGC
TGCAGCATT
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