FC923496

Overview
NameFC923496
Unique NameFC923496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            TE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   66 TEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 220          

HSP 2 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 53/164 (32.32%), Postives = 92/164 (56.10%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 483
            L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I NLD ++D+      F  FG I T+  + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V  A KK  + E
Sbjct:  158 LHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREE 318          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            TE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   64 TEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 218          

HSP 2 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 50/164 (30.49%), Postives = 91/164 (55.49%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 483
            L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D +V ++     F  FG I T+  + RD + G SRGFGF+++ + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  156 LHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREE 316          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            TE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   63 TEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 217          

HSP 2 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 55/164 (33.54%), Postives = 93/164 (56.71%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 483
            L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+DPDV E+     F  FG I T+  + RDP+ G SRGFGF++Y + E++ AA++ M+ + +  +++ V  A KK  + E
Sbjct:  155 LHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEI-TSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREE 315          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 55/163 (33.74%), Postives = 99/163 (60.74%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 483
            TE +L+E F  AGP++++ + +D +T+    Y +V F+  +DA++A+  +N   + GKP+R+  + +D      G  N+F+ NLD  ++ K LYDT SAFG I++   +    D   S+G+GF+ +++ EA++ AI+ MNG  L  R++ V  +  +K+ + E
Sbjct:   23 TEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC---DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182          

HSP 2 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 64/213 (30.05%), Postives = 106/213 (49.77%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK-GERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQN 588
            +E L +LF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +     NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +         +R+ +     +Q++ P   F +  P  QN
Sbjct:  204 DERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQN 412          

HSP 3 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 51/137 (37.23%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   79 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            N  +GYGFV F + E A+ AIK +N + L G+ + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  135 NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 58/153 (37.91%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 456
            TE +L+E F  AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   L G+PIR+  + +D      G  N+FI NL+  +D K LYDTFS FG I++        D   SRGFGF+ +++ EA+  AI  MNG  L +R++ V +
Sbjct:   23 TEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC---DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 52/175 (29.71%), Postives = 92/175 (52.57%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 477
            E+ L +LF Q G +++V V +D  +   + +GFV F   E+A  A+  +N  ++ G+ +   +A                  QD+     G NL++ NLD  +D+  L   FS +GVI T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  204 EQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 59/153 (38.56%), Postives = 94/153 (61.44%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 456
            TE +L+E+F   GPV ++ V +D VT    GY +V + +  D + A++ LN   + G+  R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+  D + G SRGF F+ Y + EA+DAAI+A+NG  L ++++ V +
Sbjct:   58 TEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL-SCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH 208          

HSP 2 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 66/220 (30.00%), Postives = 112/220 (50.91%), Query Frame = 1
Query:   37 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA------------SQDKKSLD-----VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPV---PPRP 636
            GP ++V + +D    + +G+GFV + + E A  A+  LN  ++ GK +   +A            S ++K L+      G NL++ NLD + D+  L   F AFG I T+ K+MRD D+G SRGFGF+ Y S + +  A+  MNG+ +  + + V+ A +KD + +          A  +  +Q+++    + +G P +Q      G +G P+   PP P
Sbjct:  251 GPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTI-TSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQ----------ALESQIAQRAQQRMQYGAGFPGMQ------GYMGQPMYGYPPMP 451          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 62/162 (38.27%), Postives = 97/162 (59.88%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 483
            E  L+E+F   G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L+DTFS FG I+ + K+  D D G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   65 EATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKIL-SCKVATD-DMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224          

HSP 2 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 71/245 (28.98%), Postives = 112/245 (45.71%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYA-------NGAASGP 663
            +EE L +LF   G + ++Y+ KD      +G+GFV +   E A  A++ LN  ++ G+ I V +A + ++ ++                  G NLFI NLD  +D + L + F  FG I T+ ++M D +TG S+GFGF+ + S E +  AI  MN +    + + V+ A +KD    R     ++I A N                   +QNA    G  G  +PP  Y        NG  + P
Sbjct:  245 SEEDLKKLFTPYGAITSIYLEKD-AEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTI-TSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDV---RRSQLEQQIQARNQ----------------MRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAP 467          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 60/163 (36.81%), Postives = 100/163 (61.35%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 483
            TE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +NG  L ++++ V  +  KKD + +
Sbjct:   67 TEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 227          

HSP 2 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 483
            L + F   G +++  V +D   N  +GYGFV + + E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N+D D  E+   D F  FG I T+  + RD ++G SRGFGF+++ S + + AA+EA+N +    +++ V  A KK  + E
Sbjct:  159 LHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEI-TSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREE 320          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 62/162 (38.27%), Postives = 98/162 (60.49%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 483
            E  L+E+F   G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L+DTFSAFG I+ + K+  D + G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   65 EATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL-SCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224          

HSP 2 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 71/238 (29.83%), Postives = 111/238 (46.64%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGP 663
            +EE   +LF   G + ++Y+ KD+     +G+GFV F   E A  A++ LN  ++ G+ I V +A + ++ L+                  G NLF+ NLD  +D + L + F  FG I T+ K+M D + G S+GFGF+ + + E +  AI  MN + +  + + V+ A +KD    R     ++I A N    Q +      A G P     P   G  G   PP    N    GP
Sbjct:  245 SEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTI-TSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDV---RRSQLEQQIQARNQMRMQNAA-----AGGLPGQFIPPMFYGQQGF-FPPNGRGNAPYPGP 470          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 58/170 (34.12%), Postives = 100/170 (58.82%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAER 507
            TE  L++LF     VV+V V +D+      GY ++ F +  DA  A++ LN   L+ +PIR+  +++D  + L    N+FI NLD  +D K L++TFS+FG I++  K+  D  TG S+G+GF+ ++  E++ AAI+ +NG  + ++Q+ V +  ++  +     TP  R
Sbjct:   61 TEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC-KVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227          

HSP 2 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 483
            L+E F   G +++  V  D VT   +GYGFV+F  EE A  AI  LN + +  K +       R  +A  +        N+++ NL  ++ E  L  TF  FGVI ++  +MRD  +GNSR FGF++++  EA+ +A+E MNG  L +  + V  A KK  + E
Sbjct:  152 LFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI-SSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312          

HSP 3 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 67/232 (28.88%), Postives = 110/232 (47.41%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI---RVNKASQDKKSL--------------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANG 648
            E+ L + F + G + +  V +D+  N  + +GFV F   E A  A++ +N I L    +   R  K S+ ++ L                GANL++ NLD  VD++ L + FS +G  VT+ K+M +P  G SRGFGF++Y + E +  A+  MNG+ +  + + ++ A +K+ +   H       + A  P S    P      GPP      Q   ++   VP +P   G
Sbjct:  242 EDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGN-VTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR-RAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQNGASM---VPSQPIGYG 466          
The following BLAST results are available for this feature:
BLAST of FC923496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
PABP_ASPNC7.549e-2337.58Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU7.549e-2337.58Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL7.549e-2337.58Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN7.549e-2333.74Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PAP1L_HUMAN9.860e-2337.91Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP_CRYNE2.197e-2238.56Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICST2.869e-2238.27Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM2.869e-2236.81Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL4.893e-2238.27Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_ARATH4.893e-2234.12Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC31705F10EF StrClemenN Citrus clementina cDNA clone C31705F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923496 ID=FC923496; Name=FC923496; organism=Citrus clementina; type=EST; length=709bp
ACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAA
TGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGAT
TTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTG
AATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCA
AGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTG
ACCCAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGA
GTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTC
TCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAG
CTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTC
TCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGC
AGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCC
ACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTCAGGCC
AATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAATGGTGC
TGCTTCAGGCCCAATTTCAGCTGTTCGACCACCACCACCACCACCACAGC
TGCAGCATT
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