FC923496

Overview
NameFC923496
Unique NameFC923496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 450
            +E  L+++F   G V ++ V +D +T    GY +V F   + A  AI+ LN   + GK  R+  + +D      GA N+FI NL PD+D K LYDTFS FG I+++ K+  D +TG S+GFG++ ++  E++  AI+A+NG  L  ++I V
Sbjct:   47 SEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS-KVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195          

HSP 2 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 62/202 (30.69%), Postives = 99/202 (49.01%), Query Frame = 1
Query:   85 HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQK--SRPHTLFASGPPSLQNAPQANGTVGGPVPPR 633
            ++G+GFV F + EDA   ++ LN  +  G+P+ VN+A +                 +K +   G NLFI NLD  +D+K L + F+ +G I T+ K+M   + G S+GFGF+ + + E +  AI   N Q +  + + V+ A +KD    R    A++I A N    Q+  +      A+G P     P   G     +PPR
Sbjct:  255 NKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTI-TSAKVM-TTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYGV----MPPR 447          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 63/162 (38.89%), Postives = 96/162 (59.26%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 483
            E LL+E+F   G V ++ V +D VT    GY +V F    D   AI+ LN   + G+P R+  + +D      G  N+FI NL P +D K L+DTFSAFG I+ + K+  D + G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  K+D + +
Sbjct:   71 EALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRIL-SCKVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESK 230          

HSP 2 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 72/232 (31.03%), Postives = 112/232 (48.28%), Query Frame = 1
Query:   19 ELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGP 663
            E+F   GPV +V++  D+     +G+GFV F + E A  A+K +N  ++ G+ + V +A + ++ LD                  G NLF+ NLD  +D + L + F  FG I T+ ++M D D G S+GFGF+ + S E +  AI  MN + +  + + V+ A +KD    R     ++I A N    Q +      A+G P    +P   G   G  PP     G A GP
Sbjct:  257 EIFKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTI-TSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDV---RRSQLEQQIQARNQMRMQNAAA----AAGMPGQFMSPMFYGQQPGFFPPN--GRGGAQGP 476          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.859e-21
Identity = 58/168 (34.52%), Postives = 99/168 (58.93%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAE 504
            E  L++ F  AGPV+++ V +D +T    GY +V F+   DA+ A+  +N   +  KPIR+  + +D      G  N+FI NLD  +D K +YDTFSAFG I+ + K+  D + GNS+G+GF+ +++ EA++ +I+ +NG  L  +++ V     +  + +  G  A+
Sbjct:   15 ESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL-SCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 180          

HSP 2 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 54/160 (33.75%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK---ASQDKKSLDVGANLF----IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC-NRQITVSYAYKK 468
            +++ F   G +++  V  D   N  +GYGFV F +EE A+ +I  +N + L GK + V K     + +K L   A LF    + N   D D++ L + F  +G I T+ K+M   D G S+GFGF+++++ EA++AA++A+NG+ +   + + V+ A KK
Sbjct:  106 IYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI-TSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262          

HSP 3 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 49/176 (27.84%), Postives = 88/176 (50.00%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL-YGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 477
            +E L E F   G + + Y    +     +G+GFV F + E A+ A++ LN   +  GK + V +A                  Q +     G NL++ NLD  +D+  L   FS +G I T+ K+M D + G S+GFGF+ +++   +  A+  +NG+ + ++ + V+ A +K+ +
Sbjct:  196 DEKLKEFFEPYGKITS-YKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNI-TSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 58/159 (36.48%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 477
            E  L +LF Q  PV N+ V +D +T+   GY +V F + EDA  A++ LN   +  +PIR+  +++D  + L    N+FI NLD  +D K LY+TFS+FG I+ + K+  D   G S+G+GF+ ++  E + AAI+ +NG  L ++Q+ V +  ++  +
Sbjct:   58 ESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTIL-SCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213          

HSP 2 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK--ASQDKKSLDVGA-----NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 483
            L+E F   G +++  V  D V    +GYGFV+F  EE A  AI  LN + L  K + V      QD+   + GA     N+++ NL  ++ +  L  TF  +G I ++  +M+D  +GNSR FGF+++ S EA+  A+E MNG  L    + V  A KK  + E
Sbjct:  148 LYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE 308          

HSP 3 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 71/241 (29.46%), Postives = 115/241 (47.72%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLD--------------VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRP------HTLFASGPPSLQNAPQANGTVG-GPVPPRPYANG 648
            T++ L + F + G + +  V KD+  N  + +GFV F S E A  A++ +N I L G+ +    R  K S  ++ L                G+NL++ NLD  V+++ L + FS +G  VT+ K+M +   G SRGFGF++Y + E +  A++ MNG+ +  + + V+ A +K+   ER            +P +    P      H     GP S  + P   G  G G VP +P   G
Sbjct:  237 TDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGN-VTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKE---ERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYG 470          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 57/157 (36.31%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            TE +L+ELF   G V ++ V +D VT    GY +V +      + A+  LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + G S+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   54 TEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 208          

HSP 2 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 52/164 (31.71%), Postives = 94/164 (57.32%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 483
            L + F   G +++  V +D    + +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+DP+V+++     F  FG I T+  + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V  A KK  + E
Sbjct:  146 LHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI-TSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREE 306          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 63/170 (37.06%), Postives = 98/170 (57.65%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTPAE 504
            TE+LL+  F   GPV+++ + +D+VT    GY +V F    DA  A+  +N   + GK IR+  + +D      G  N+FI NLD  +D K LY+ FSAFG I+++ K+M D D G S+G+ F+ + +  A+D AIE MNG+ L   ++ V  +  +KD + E     +E
Sbjct:   22 TEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-KVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188          

HSP 2 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 53/159 (33.33%), Postives = 88/159 (55.35%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            L+E F   G +++  V  D   +  +GY FV F+++  AD AI+ +N   L G  +       R ++ ++ +       N++I N   D+D++ L D FS +G  ++  K+M D  +G S+GFGF+S+DS EA+  A+E MNG+ +  + I V  A KK
Sbjct:  114 LYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS-VKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268          

HSP 3 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 51/171 (29.82%), Postives = 91/171 (53.22%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 465
            +E L ++F + G  ++V V  D  +   +G+GFV F S E A  A++ +N   + G+ I V +A +        K+  +           G  L+I NLD  +D++ L + FS+FG I +  K+M++   G S+GFG I + S E +  A+  MNG+ L ++ ++++ A +
Sbjct:  203 DERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSI-SRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 55/164 (33.54%), Postives = 94/164 (57.32%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGER 486
            TE +L+E F  AGP++++ + +D++T    GY +V ++   DA  A++ LN   + G+P+R+  + +D      G  N+FI NL   +D K LY+ FSAFG I++        D    +G+GF+ +   E+++ AI+ MNG +L  R+I V  +   K+ + ER
Sbjct:   14 TEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC---DEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 174          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 58/159 (36.48%), Postives = 93/159 (58.49%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKD 471
            TE LL+++F   GP+ ++ V +D VT    GY +V +   E    AI+ LN  ++ G+P R+  + +D      G+ N+FI NL P +D K L++TFS FG ++ + K+  D + GNSRGFGF+ +     +  AIEA+NG  +   ++ V+ +  KKD
Sbjct:   62 TEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVL-SCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKD 218          

HSP 2 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 74/245 (30.20%), Postives = 118/245 (48.16%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNP--SSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPR--PYANGAASGPISA 672
            T+E   +LF Q G +V+  + KD      +G+GFV F     A  A++ LN  +   + + V +A +                 +K +   G NLFI NLD  +D++ L + F+ +G I T+ ++MRD + GNS+GFGF+ + S E +  A+   N Q +  + + V+ A +KD    R    A++I A N      Q+ +     A+G P  Q  PQ      G + PR  P  N   +GP+ A
Sbjct:  243 TDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTI-TSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPG-QYMPQ---MFYGVMAPRGFPGPNPGMNGPMGA 477          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 57/152 (37.50%), Postives = 89/152 (58.55%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 453
            +E  L+++F   G V ++ V +D +T    GY +V F   E    AI+ LN   + G+  R+  + +D      G+ N+FI NL PD+D K LYDTFS FG I+++ KI  D + G S+GFGF+ ++   A+  AI+A+NG  L  ++I V+
Sbjct:   50 SEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS-KIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 199          

HSP 2 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 72/229 (31.44%), Postives = 113/229 (49.34%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPS-SQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPR 633
            T+E   ELF + GP+V+  + KD    L +G+GFV +   EDA  A++ LN  +L G+ + V +A +  + + V                 G NLF+ NLD  VD++ L + F+ +G I T+ K+MR  + G S+GFGF+ + + E +  AI   N Q +  + + V+ A +KD    R    A++I A N     Q +      A+G P     P   G     +PPR
Sbjct:  231 TDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTI-TSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGV----MPPR 449          

HSP 3 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 47/162 (29.01%), Postives = 84/162 (51.85%), Query Frame = 1
Query:   13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 477
            L++ F   G +++  +  D      +G+GFV F  E  A  AI  LN + L G+ I       R  + SQ +++     NL++ N++ +  ++   + F+ FG IV+   + +D D G  +GFGF++Y+  E +  A+EA+N   L   ++ V  A KK+ +
Sbjct:  142 LYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVS-ASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 56/151 (37.09%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 450
            TE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L NRQ+ V
Sbjct:   30 TEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177          

HSP 2 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 49/167 (29.34%), Postives = 88/167 (52.69%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 453
            +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ + ++ + V+
Sbjct:  212 DEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374          
The following BLAST results are available for this feature:
BLAST of FC923496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
PABP_CANGA6.391e-2238.41Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU8.347e-2238.89Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME1.859e-2134.52Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP5_ARATH4.142e-2136.48Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP_EMENI9.228e-2136.31Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAB4L_HUMAN9.228e-2137.06Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PAP1M_HUMAN1.574e-2033.54Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_KLULA2.056e-2036.48Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_YEAST2.685e-2037.50Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_PONPY3.507e-2037.09Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]

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Properties
Property NameValue
Genbank descriptionC31705F10EF StrClemenN Citrus clementina cDNA clone C31705F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923496 ID=FC923496; Name=FC923496; organism=Citrus clementina; type=EST; length=709bp
ACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAA
TGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGAT
TTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTG
AATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCA
AGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTG
ACCCAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGA
GTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTC
TCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAG
CTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTC
TCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGC
AGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCC
ACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTCAGGCC
AATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAATGGTGC
TGCTTCAGGCCCAATTTCAGCTGTTCGACCACCACCACCACCACCACAGC
TGCAGCATT
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