FC923496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17 Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 477 T+E L LF G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17 Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 477 T+E L LF G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17 Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 477 T+E L LF G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17 Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 477 T+E L LF G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17 Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 477 T++ LF G + + + +D++T GYGFV + DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 51 TQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16 Identity = 57/162 (35.19%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN-SRGFGFISYDSFEASDAAIEAMNGQ--YLCNRQITVSYAYKKDTK 477 T+E LF G + + + +D++T GYGFV + DAD AI LN +KL K I+V+ A S+ ANL++ +L +++K + FS +G I+T+ +I+ D TG+ SRG GFI +D ++ AI+ +NGQ + ITV +A K Sbjct: 47 TQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSSLPKTMNQKEMEQLFSQYGRIITS-RILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQK 206
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16 Identity = 57/174 (32.76%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYV----PKDRVTNLHQG-----------YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468 TE L+ +LF Q GP + + P R N G Y FVEF DA A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI M GQ+L RQI ++A +K Sbjct: 21 TEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16 Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468 TE L+ +LF Q GP N + D N Y FVEF A A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K Sbjct: 19 TEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16 Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468 TE L+ +LF Q GP N + D N Y FVEF A A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K Sbjct: 19 TEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15 Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 22 LFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468 LF QAG V V +R T+ +G+GFV S ++A+ A++ N L G+ + VNKA+ + + + +++GNL DVD L FS G +V +++ D +TG SRGFGF++ + + AI A++GQ L R I V+ A ++ Sbjct: 169 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV-EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323 The following BLAST results are available for this feature:
BLAST of FC923496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923496 ID=FC923496; Name=FC923496; organism=Citrus clementina; type=EST; length=709bpback to top |