FC923496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 50/139 (35.97%), Postives = 73/139 (52.52%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 417 T+ L+ LF GP+ + +D T GY FV+F SE D+ AIKVLN I + K ++V+ A +S+ NL++ NL + + L F +G IV I+RD TG RG F+ Y+ E + AI A+N Sbjct: 137 TDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 1 Query: 22 LFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK---------------------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468 LF +AG V V V D++T +G+GFV ++E+ + A + N ++ G+ IRVN K S+D +++GNL VD+ L + FS G +V + K++ D D+G SRGFGF++Y S + + AI+++NG L R I VS A ++ Sbjct: 106 LFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV-DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14 Identity = 51/158 (32.28%), Postives = 86/158 (54.43%), Query Frame = 1 Query: 7 ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 459 E L LF QAG V V +R T+ +G+GFV + E+A+ A+++ N + G+ + VNKA+ + ++ + +++GN+ +D+ L FS G +V + +++ D +TG SRGFGF++ S AI ++GQ L R I V+ A Sbjct: 150 EGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVV-SARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14 Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1 Query: 4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429 E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 147 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14 Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1 Query: 4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429 E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 141 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 296
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14 Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1 Query: 4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429 E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 147 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14 Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1 Query: 4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429 E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 142 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14 Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1 Query: 4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429 E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 113 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14 Identity = 52/158 (32.91%), Postives = 85/158 (53.80%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468 TE +L++ F + + +V + KD + YG+ F S +DA+ AI+ N L GK IRV + + D + VG N+F+ NL V +L D F FG IV+ + + G SRG+GF+ ++ +A+ AAI+ +N + +++I V KK Sbjct: 36 TEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSCK--VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190 HSP 2 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 60/203 (29.56%), Postives = 101/203 (49.75%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGERHGTPAERILAANNPSSQKSRPHT 555 +E+LL E F + G +V++ + KD L +GY FV F + EDA A + +N K K + V +A +++K + +N+++ N++ V E+ L FS G I T+ K+M D + G S+GFGF+ + + E + A++ +GQ + + V+ A KK D K + R+ A + SS P T Sbjct: 213 SEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGT 412 HSP 3 Score: 69.707 bits (169), Expect = 1.744e-11 Identity = 53/159 (33.33%), Postives = 83/159 (52.20%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468 T +L ++F + G +V+ V +GYGFV+F E+ A AI+ LN + K I V K + K + NL++ NLD DV E LL + F+ FG IV + I +D + RG+ F+++D+ E + A E +NG ++ + V A KK Sbjct: 124 TNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV-SLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14 Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 1 Query: 37 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-------------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 459 G + V D+ + + +GFV ++ EDA+ I+ LN ++ G+ I+VN + + +D+ ++IGNL V +LL D FS G ++ K+ R P T S GFGF+S+ S E +AAI+A+N L ++I V+ A Sbjct: 108 GAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVL-GAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260 The following BLAST results are available for this feature:
BLAST of FC923496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923496 ID=FC923496; Name=FC923496; organism=Citrus clementina; type=EST; length=709bpback to top |