FC923496

Overview
NameFC923496
Unique NameFC923496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 50/139 (35.97%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 417
            T+  L+ LF   GP+    + +D  T    GY FV+F SE D+  AIKVLN I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ Y+  E +  AI A+N
Sbjct:  137 TDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 1
Query:   22 LFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK---------------------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            LF +AG V  V V  D++T   +G+GFV   ++E+ + A +  N  ++ G+ IRVN      K                                 S+D    +++GNL   VD+  L + FS  G +V + K++ D D+G SRGFGF++Y S +  + AI+++NG  L  R I VS A ++
Sbjct:  106 LFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV-DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 51/158 (32.28%), Postives = 86/158 (54.43%), Query Frame = 1
Query:    7 ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 459
            E L  LF QAG V    V  +R T+  +G+GFV   + E+A+ A+++ N   + G+ + VNKA+       +  ++ +    +++GN+   +D+  L   FS  G +V + +++ D +TG SRGFGF++  S      AI  ++GQ L  R I V+ A
Sbjct:  150 EGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVV-SARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429
            E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  147 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429
            E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  141 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 296          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429
            E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  147 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429
            E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  142 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 429
            E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  113 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 52/158 (32.91%), Postives = 85/158 (53.80%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            TE +L++ F +   + +V + KD  +     YG+  F S +DA+ AI+  N   L GK IRV  +  + D +   VG N+F+ NL   V   +L D F  FG IV+    +   + G SRG+GF+ ++  +A+ AAI+ +N   + +++I V    KK
Sbjct:   36 TEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSCK--VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190          

HSP 2 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 60/203 (29.56%), Postives = 101/203 (49.75%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGERHGTPAERILAANNPSSQKSRPHT 555
            +E+LL E F + G +V++ + KD    L +GY FV F + EDA  A + +N  K   K + V +A                  +++K +   +N+++ N++  V E+ L   FS  G I T+ K+M D + G S+GFGF+ + + E +  A++  +GQ    + + V+ A KK D K +       R+ A  + SS    P T
Sbjct:  213 SEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGT 412          

HSP 3 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 53/159 (33.33%), Postives = 83/159 (52.20%), Query Frame = 1
Query:    1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468
            T  +L ++F + G +V+  V         +GYGFV+F  E+ A  AI+ LN   +  K I V K  +     K  +   NL++ NLD DV E LL + F+ FG IV +  I +D +    RG+ F+++D+ E +  A E +NG    ++ + V  A KK
Sbjct:  124 TNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV-SLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279          
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 1
Query:   37 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-------------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 459
            G +    V  D+ +   + +GFV  ++ EDA+  I+ LN  ++ G+ I+VN   +  + +D+                ++IGNL   V  +LL D FS  G ++   K+ R P T  S GFGF+S+ S E  +AAI+A+N   L  ++I V+ A
Sbjct:  108 GAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVL-GAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260          
The following BLAST results are available for this feature:
BLAST of FC923496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SXL_DROME1.686e-1435.97Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
ROC2_NICSY2.202e-1430.7729 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC4_NICSY2.875e-1432.2831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PUF60_RAT2.875e-1430.57Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB2.875e-1430.57Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE2.875e-1430.57Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN2.875e-1430.57Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN2.875e-1430.57Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
PABPX_ARATH2.875e-1432.91Probable polyadenylate-binding protein At2g36660 O... [more]
RRP2_SPIOL4.905e-1431.8230S ribosomal protein 2, chloroplastic OS=Spinacia... [more]

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Properties
Property NameValue
Genbank descriptionC31705F10EF StrClemenN Citrus clementina cDNA clone C31705F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923496 ID=FC923496; Name=FC923496; organism=Citrus clementina; type=EST; length=709bp
ACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAA
TGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGAT
TTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTG
AATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCA
AGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTG
ACCCAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGA
GTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTC
TCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAG
CTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTC
TCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGC
AGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCC
ACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTCAGGCC
AATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAATGGTGC
TGCTTCAGGCCCAATTTCAGCTGTTCGACCACCACCACCACCACCACAGC
TGCAGCATT
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