FC923498

Overview
NameFC923498
Unique NameFC923498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length358
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_FELCA (40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.851e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_CRIGR (40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.851e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_COTJA (40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.851e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_CHICK (40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.851e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_CANFA (40S ribosomal protein S17 OS=Canis familiaris GN=RPS17 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.851e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_RAT (40S ribosomal protein S17 OS=Rattus norvegicus GN=Rps17 PE=2 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 6.568e-31
Identity = 62/81 (76.54%), Postives = 75/81 (92.59%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 8.579e-31
Identity = 60/82 (73.17%), Postives = 76/82 (92.68%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRRM 356
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RI++GPVRGISLKLQEEER+RRM
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRM 82          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 8.579e-31
Identity = 60/82 (73.17%), Postives = 76/82 (92.68%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRRM 356
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RI++GPVRGISLKLQEEER+RRM
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRM 82          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_NEUCR (40S ribosomal protein S17 OS=Neurospora crassa GN=rps-17 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.463e-30
Identity = 62/81 (76.54%), Postives = 75/81 (92.59%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKKS++ +IERYY ++TLDF TNK+I +E+AII SKRLRNKIAG++THLMKRI+RGPVRGIS KLQEEER+R+
Sbjct:    1 MGRVRTKTVKKSAKVIIERYYPKLTLDFETNKRICDEIAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERK 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.463e-30
Identity = 63/81 (77.78%), Postives = 75/81 (92.59%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRI+RGPVRGIS KLQEEER+R+
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERK 81          
The following BLAST results are available for this feature:
BLAST of FC923498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_FELCA3.851e-3176.5440S ribosomal protein S17 OS=Felis catus GN=RPS17 ... [more]
RS17_CRIGR3.851e-3176.5440S ribosomal protein S17 OS=Cricetulus griseus GN... [more]
RS17_COTJA3.851e-3176.5440S ribosomal protein S17 OS=Coturnix coturnix jap... [more]
RS17_CHICK3.851e-3176.5440S ribosomal protein S17 OS=Gallus gallus GN=RPS1... [more]
RS17_CANFA3.851e-3176.5440S ribosomal protein S17 OS=Canis familiaris GN=R... [more]
RS17_RAT6.568e-3176.5440S ribosomal protein S17 OS=Rattus norvegicus GN=... [more]
RS17_THEPA8.579e-3173.1740S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN8.579e-3173.1740S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17_NEUCR1.463e-3076.5440S ribosomal protein S17 OS=Neurospora crassa GN=... [more]
RS17B_SCHPO1.463e-3077.7840S ribosomal protein S17-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC31705F12EF StrClemenN Citrus clementina cDNA clone C31705F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923498 ID=FC923498; Name=FC923498; organism=Citrus clementina; type=EST; length=358bp
GGCTAGCACTCGTCTTCGCTTTAGCTGCCGCAATCTCTTGACATCTCAAG
CTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGACAGCAGCAGCAGCTTC
TTAAACTGAAATGGGTCGTGTTCGTACCAAGACCGTGAAGAAGTCCTCTC
GCCAGGTGATTGAGAGGTACTACTCAAGAATGACACTGGACTTCCATACC
AACAAGAAGATTTTGGAGGAGGTTGCTATCATCCCCTCGAAGAGGCTGCG
TAACAAAATTGCTGGGTTCTCAACCCATTTGATGAAGAGGATCAAAAGGG
GTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAGAGGAGCGCGACCGC
CGCATGGA
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