FC923498

Overview
NameFC923498
Unique NameFC923498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length358
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.463e-30
Identity = 63/81 (77.78%), Postives = 75/81 (92.59%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRI+RGPVRGIS KLQEEER+R+
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERK 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_CAEEL (40S ribosomal protein S17 OS=Caenorhabditis elegans GN=rps-17 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.707e-29
Identity = 61/81 (75.31%), Postives = 73/81 (90.12%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            M RVRTKTVKK+SR +IE+YY+RMT DFH NK++ +EVAII SK LRNKIAG+ THLM+RI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_ANOGA (40S ribosomal protein S17 OS=Anopheles gambiae GN=RpS17 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 4.707e-29
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKT+KK+S+ +IE+YY+R+T+DF TNK+I+EEVAIIP+K LRNKIAGF THLMKR++   VRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKIAGFVTHLMKRLRHSQVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17B_YEAST (40S ribosomal protein S17-B OS=Saccharomyces cerevisiae GN=RPS17B PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.148e-29
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKRI++GPVRGIS KLQEEER+R+
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERK 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17A_YEAST (40S ribosomal protein S17-A OS=Saccharomyces cerevisiae GN=RPS17A PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.148e-29
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKRI++GPVRGIS KLQEEER+R+
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERK 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_DROME (40S ribosomal protein S17 OS=Drosophila melanogaster GN=RpS17 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.049e-28
Identity = 59/81 (72.84%), Postives = 73/81 (90.12%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK+++ +IE+YY+R+TLDFHTNK+I EEVAIIP+K LRNKIAG+ THLM R++   VRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_SPOFR (40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.370e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK+++ +IE+YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_DICDI (40S ribosomal protein S17 OS=Dictyostelium discoideum GN=rps17 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.871e-26
Identity = 55/81 (67.90%), Postives = 70/81 (86.42%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKT+K++S+ +IE++Y R+T DF TNK+  +++A IPSKRLRNKIAGF THLM+RI  GPVRGIS KLQEEER++R
Sbjct:    1 MGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRRIANGPVRGISYKLQEEEREKR 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_ENCCU (40S ribosomal protein S17 OS=Encephalitozoon cuniculi GN=RPS17 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 33/81 (40.74%), Postives = 56/81 (69.14%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MG VR K VK+++R + E+Y+ R+   F  N  ++++VA++ SK+L+N+IAG+ T L K+I +G    + +K  EEER+R+
Sbjct:    1 MGCVRNKIVKRAARTIAEKYFQRLDSTFDHNLLVVQDVAVVQSKKLKNEIAGYLTSLYKKILKGTYNKVYIKSHEEERERK 81          
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17E_META3 (30S ribosomal protein S17e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps17e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 293
            MGR+R   +K++   ++E+Y  R+T DF TNKK+++EVA I +KRLRN++AG+ T  MK++
Sbjct:    1 MGRIRQTFIKRAGEDLVEKYEDRLTTDFETNKKVIDEVAEIATKRLRNRVAGYVTKKMKKV 61          
The following BLAST results are available for this feature:
BLAST of FC923498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17A_SCHPO1.463e-3077.7840S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_CAEEL4.707e-2975.3140S ribosomal protein S17 OS=Caenorhabditis elegan... [more]
RS17_ANOGA4.707e-2972.8440S ribosomal protein S17 OS=Anopheles gambiae GN=... [more]
RS17B_YEAST6.148e-2971.6040S ribosomal protein S17-B OS=Saccharomyces cerev... [more]
RS17A_YEAST6.148e-2971.6040S ribosomal protein S17-A OS=Saccharomyces cerev... [more]
RS17_DROME1.049e-2872.8440S ribosomal protein S17 OS=Drosophila melanogast... [more]
RS17_SPOFR1.370e-2871.6040S ribosomal protein S17 OS=Spodoptera frugiperda... [more]
RS17_DICDI4.871e-2667.9040S ribosomal protein S17 OS=Dictyostelium discoid... [more]
RS17_ENCCU2.772e-1340.7440S ribosomal protein S17 OS=Encephalitozoon cunic... [more]
RS17E_META34.003e-1247.5430S ribosomal protein S17e OS=Methanococcus aeolic... [more]

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Properties
Property NameValue
Genbank descriptionC31705F12EF StrClemenN Citrus clementina cDNA clone C31705F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923498 ID=FC923498; Name=FC923498; organism=Citrus clementina; type=EST; length=358bp
GGCTAGCACTCGTCTTCGCTTTAGCTGCCGCAATCTCTTGACATCTCAAG
CTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGACAGCAGCAGCAGCTTC
TTAAACTGAAATGGGTCGTGTTCGTACCAAGACCGTGAAGAAGTCCTCTC
GCCAGGTGATTGAGAGGTACTACTCAAGAATGACACTGGACTTCCATACC
AACAAGAAGATTTTGGAGGAGGTTGCTATCATCCCCTCGAAGAGGCTGCG
TAACAAAATTGCTGGGTTCTCAACCCATTTGATGAAGAGGATCAAAAGGG
GTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAGAGGAGCGCGACCGC
CGCATGGA
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