FC923499

Overview
NameFC923499
Unique NameFC923499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.913e-36
Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI+KE + L  +P    SA P  ++M ++   I+GP++SPY GGVF + +  P DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K D  +   TA+ WT+ YA
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.913e-36
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D++ ++   I+GP+ SPY GGVF L +  P DYP   PK+ F TKIYHPNI+  G ICLDILKD+WSPAL +  VLLSI +LL+  NPDDPL   IA  +K D  +   TA+EWT+ YA
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36
Identity = 72/143 (50.35%), Postives = 95/143 (66.43%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K D  +   TA+ WT+ YA
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.567e-36
Identity = 74/143 (51.75%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI +E   L  +P    SA P  D++ ++   I+GP+ SPY GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K D +    +A+EWTR YA
Sbjct:    4 KRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 75/143 (52.45%), Postives = 92/143 (64.34%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P DYP+  PK+   TKIYHPNI+  G ICLDILKD+WSPAL I  VLLSI +LL+  NPDDPL   IA  +K D  +   TAKEWT+ YA
Sbjct:    4 KRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 74/143 (51.75%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE Q L  +P    SA P  D++ ++   I+GP +SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D     + A+EWT+ YA
Sbjct:    4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 76/146 (52.05%), Postives = 91/146 (62.33%), Query Frame = 3
Query:   90 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            R+ +E Q L  EP PG+     E NM      I+G S SPYEGG+F LE+ +PE YP   PK+RFLT IYHPNID  GRICLDIL    K  W PAL I TVL SIQ L+S PNPDDPL  +I+  +K +       AK+WT  +A
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHA 151          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  +++ ++   I+GPS SPY GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI ++L+ PNPDDPL   IA  +K    +   TA+EWTR YA
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D++ ++   I+GP+ SPY+GGVF L +  P DYP   PKV F TKIYHPNI+  G ICLDIL+ +WSPAL +  VLLSI +LL  PNPDDPL   IA  +KAD  +    A+EWT+ YA
Sbjct:    4 KRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
The following BLAST results are available for this feature:
BLAST of FC923499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC8_ARATH1.913e-3650.35Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC4_YEAST1.913e-3651.75Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC4_SOLLC3.264e-3650.35Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC4_SCHPO5.567e-3651.75Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC4_CANAL7.270e-3652.45Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC2_CAEEL7.270e-3651.75Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBE2T_XENLA9.495e-3652.05Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC1_MAGGR9.495e-3651.75Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D4_HUMAN9.495e-3651.75Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D2_XENLA9.495e-3651.75Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705G01EF StrClemenN Citrus clementina cDNA clone C31705G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923499 ID=FC923499; Name=FC923499; organism=Citrus clementina; type=EST; length=688bp
GGAGGGAGAGGGAAAAAAAGACGATCGATTTCTGACTCATCTCTGTAAAA
TCTCTTGGAATTCCGATGGCTAGTGGCAACCTCCCTCGCAGAATTGTCAA
GGAAACCCAGCGGCTGCTCAGTGAACCAGCTCCGGGCATTAGTGCTTCTC
CTGCCGAAGACAACATGCGATATTTTAATGTAATGATTCTTGGTCCATCT
CAGTCTCCTTATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTTTGCCTGA
AGATTATCCAATGTCCGCTCCTAAGGTTCGATTTCTGACCAAAATATATC
ATCCTAACATAGACAAGCTTGGAAGGATATGCCTTGATATTTTGAAAGAT
AAATGGAGTCCCGCCCTGCAAATCCGCACAGTCCTGCTGAGTATCCAAGC
TCTTTTGAGTGCTCCGAACCCAGACGATCCACTTTCTGATAACATTGCAA
AGCATTGGAAGGCAGATGAGACTGAAGCTGTTGAAACTGCGAAGGAATGG
ACCCGGTTATATGCAAGTGATGGGTGAAGGCTAGAGCTTGTTCGAGAATA
TCTCTCTACAAGTTTATGTTAAAAACACTAATTGATGTATGAACAGATGT
GTAAAAATGTTTCTCGGCCGGGGTATTTACTCTTAGTTCCTGGATATCTC
CTACGGGTATTAAATGGTTTAAATCCATTGGATTTTGT
back to top