FC923499

Overview
NameFC923499
Unique NameFC923499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 3 
Query:  156 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDIL-------KDKWSPALQIRTVLLSIQALL 407
            E  +    V+I GP  +PY  G+F+ ++F P  YP S PK  FLT       ++PN+   G+ICL IL       ++KW+P   +  VL+SIQ ++
Sbjct:  439 EGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSIQEVI 534
The following BLAST results are available for this feature:
BLAST of FC923499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC17_CAEEL8.094e-1136.46Probable ubiquitin-conjugating enzyme protein 17 O... [more]

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Properties
Property NameValue
Genbank descriptionC31705G01EF StrClemenN Citrus clementina cDNA clone C31705G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923499 ID=FC923499; Name=FC923499; organism=Citrus clementina; type=EST; length=688bp
GGAGGGAGAGGGAAAAAAAGACGATCGATTTCTGACTCATCTCTGTAAAA
TCTCTTGGAATTCCGATGGCTAGTGGCAACCTCCCTCGCAGAATTGTCAA
GGAAACCCAGCGGCTGCTCAGTGAACCAGCTCCGGGCATTAGTGCTTCTC
CTGCCGAAGACAACATGCGATATTTTAATGTAATGATTCTTGGTCCATCT
CAGTCTCCTTATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTTTGCCTGA
AGATTATCCAATGTCCGCTCCTAAGGTTCGATTTCTGACCAAAATATATC
ATCCTAACATAGACAAGCTTGGAAGGATATGCCTTGATATTTTGAAAGAT
AAATGGAGTCCCGCCCTGCAAATCCGCACAGTCCTGCTGAGTATCCAAGC
TCTTTTGAGTGCTCCGAACCCAGACGATCCACTTTCTGATAACATTGCAA
AGCATTGGAAGGCAGATGAGACTGAAGCTGTTGAAACTGCGAAGGAATGG
ACCCGGTTATATGCAAGTGATGGGTGAAGGCTAGAGCTTGTTCGAGAATA
TCTCTCTACAAGTTTATGTTAAAAACACTAATTGATGTATGAACAGATGT
GTAAAAATGTTTCTCGGCCGGGGTATTTACTCTTAGTTCCTGGATATCTC
CTACGGGTATTAAATGGTTTAAATCCATTGGATTTTGT
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