FC923499

Overview
NameFC923499
Unique NameFC923499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.620e-35
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  +++ ++   I+GP  SPY GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI ++L+ PNPD+PL   IA  +K D      TA+EWTR YA
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYA 146
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146
[Close]
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146
The following BLAST results are available for this feature:
BLAST of FC923499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UB2D2_RAT9.495e-3651.75Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE9.495e-3651.75Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN9.495e-3651.75Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN9.495e-3651.75Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC1_COLGL1.620e-3551.05Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2D3_RAT2.115e-3551.05Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB2.115e-3551.05Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE2.115e-3551.05Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA2.115e-3551.05Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN2.115e-3551.05Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC31705G01EF StrClemenN Citrus clementina cDNA clone C31705G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923499 ID=FC923499; Name=FC923499; organism=Citrus clementina; type=EST; length=688bp
GGAGGGAGAGGGAAAAAAAGACGATCGATTTCTGACTCATCTCTGTAAAA
TCTCTTGGAATTCCGATGGCTAGTGGCAACCTCCCTCGCAGAATTGTCAA
GGAAACCCAGCGGCTGCTCAGTGAACCAGCTCCGGGCATTAGTGCTTCTC
CTGCCGAAGACAACATGCGATATTTTAATGTAATGATTCTTGGTCCATCT
CAGTCTCCTTATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTTTGCCTGA
AGATTATCCAATGTCCGCTCCTAAGGTTCGATTTCTGACCAAAATATATC
ATCCTAACATAGACAAGCTTGGAAGGATATGCCTTGATATTTTGAAAGAT
AAATGGAGTCCCGCCCTGCAAATCCGCACAGTCCTGCTGAGTATCCAAGC
TCTTTTGAGTGCTCCGAACCCAGACGATCCACTTTCTGATAACATTGCAA
AGCATTGGAAGGCAGATGAGACTGAAGCTGTTGAAACTGCGAAGGAATGG
ACCCGGTTATATGCAAGTGATGGGTGAAGGCTAGAGCTTGTTCGAGAATA
TCTCTCTACAAGTTTATGTTAAAAACACTAATTGATGTATGAACAGATGT
GTAAAAATGTTTCTCGGCCGGGGTATTTACTCTTAGTTCCTGGATATCTC
CTACGGGTATTAAATGGTTTAAATCCATTGGATTTTGT
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