FC923499

Overview
NameFC923499
Unique NameFC923499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    ++EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE + L  +P    SA P  D+M  +   I+GP+ SP+ GGVF + +  P DYP   PKV F TK+YHPNI+  G ICLDILK++WSPAL +  VLLSI +LL+ PNPDDPL   IA  +K D  +   TA+ WT+ YA
Sbjct:    4 KRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 71/143 (49.65%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  ++M ++   I+GP+ SPY+GG F L +  P +YP   PKV F T+IYHPN++  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +   TA+EWT+ YA
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 71/143 (49.65%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  ++M ++   I+GP+ SPY+GG F L +  P +YP   PKV F T+IYHPN++  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +   TA+EWT+ YA
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.371e-34
Identity = 72/143 (50.35%), Postives = 92/143 (64.34%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D+M ++   I+GP+ SPY+GGVF L +  P DYP   PKV F T+IYHPNI+    ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +K D  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.791e-34
Identity = 71/146 (48.63%), Postives = 95/146 (65.07%), Query Frame = 3
Query:   90 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            R+ +E   L +EP PGI+    +D M      ILG + +PYE GVFKLE+ +PE YP   P++RFLT IYHPNID  GRICLD+L    K  W P+L I TVL SIQ L+S PNPDDPL  +I+  +K ++   ++ A++WT  +A
Sbjct:    6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.339e-34
Identity = 71/143 (49.65%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D++ ++   I+GP  S Y+GGVF L +  P DYP   PK+ F TKIYHPNI+  G ICLDIL+ +WSPAL +  VLLSI +LL  PNPDDPL  +IA+ +K+D+ +    A+EWT+ YA
Sbjct:    4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.339e-34
Identity = 71/143 (49.65%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D++ ++   I+GP  S Y+GGVF L +  P DYP   PK+ F TKIYHPNI+  G ICLDIL+ +WSPAL +  VLLSI +LL  PNPDDPL  +IA+ +K+D+ +    A+EWT+ YA
Sbjct:    4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.339e-34
Identity = 71/143 (49.65%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI KE   L  +P    SA P  D++ ++   I+GP  S Y+GGVF L +  P DYP   PK+ F TKIYHPNI+  G ICLDIL+ +WSPAL +  VLLSI +LL  PNPDDPL  +IA+ +K+D+ +    A+EWT+ YA
Sbjct:    4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.161e-33
Identity = 72/146 (49.32%), Postives = 93/146 (63.70%), Query Frame = 3
Query:   90 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            R+ KE   L  EP PGI+    +D +      ILG + +PYE GVF LE+ +PE YP   P+VRFLT IYHPNID  GRICLDIL    K  W P+L I TVL SIQ L++ PNPDDPL  +I+  +K ++   ++ AK+WT  +A
Sbjct:    6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          
The following BLAST results are available for this feature:
BLAST of FC923499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UB2D2_PIG2.115e-3551.05Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC30_ARATH3.608e-3550.35Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
U2D2B_RAT3.608e-3549.65Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE3.608e-3549.65Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2D3_BOVIN1.371e-3450.35Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBE2T_HUMAN1.791e-3448.63Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UB2D1_MOUSE2.339e-3449.65Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN2.339e-3449.65Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN2.339e-3449.65Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBE2T_MOUSE1.161e-3349.32Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC31705G01EF StrClemenN Citrus clementina cDNA clone C31705G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923499 ID=FC923499; Name=FC923499; organism=Citrus clementina; type=EST; length=688bp
GGAGGGAGAGGGAAAAAAAGACGATCGATTTCTGACTCATCTCTGTAAAA
TCTCTTGGAATTCCGATGGCTAGTGGCAACCTCCCTCGCAGAATTGTCAA
GGAAACCCAGCGGCTGCTCAGTGAACCAGCTCCGGGCATTAGTGCTTCTC
CTGCCGAAGACAACATGCGATATTTTAATGTAATGATTCTTGGTCCATCT
CAGTCTCCTTATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTTTGCCTGA
AGATTATCCAATGTCCGCTCCTAAGGTTCGATTTCTGACCAAAATATATC
ATCCTAACATAGACAAGCTTGGAAGGATATGCCTTGATATTTTGAAAGAT
AAATGGAGTCCCGCCCTGCAAATCCGCACAGTCCTGCTGAGTATCCAAGC
TCTTTTGAGTGCTCCGAACCCAGACGATCCACTTTCTGATAACATTGCAA
AGCATTGGAAGGCAGATGAGACTGAAGCTGTTGAAACTGCGAAGGAATGG
ACCCGGTTATATGCAAGTGATGGGTGAAGGCTAGAGCTTGTTCGAGAATA
TCTCTCTACAAGTTTATGTTAAAAACACTAATTGATGTATGAACAGATGT
GTAAAAATGTTTCTCGGCCGGGGTATTTACTCTTAGTTCCTGGATATCTC
CTACGGGTATTAAATGGTTTAAATCCATTGGATTTTGT
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