FC923499

Overview
NameFC923499
Unique NameFC923499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 70/144 (48.61%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 518
            +RI KE   +  +P P  SA P  DN+  +   ILGP  S YEGGVF L++    +YP   PKV F T+IYH NI+  G ICLDILKD WSPAL I  VLLSI +LL+  NP DPL  +IA  +  +  E    A++WT+ YA+
Sbjct:   50 KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 193          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.961e-30
Identity = 66/144 (45.83%), Postives = 92/144 (63.89%), Query Frame = 3
Query:   90 RIVKETQRL-LSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            RI KE Q    ++ + GI   P  DN+      I GP  +PYEGG F++++ +P+ YP   PK++F TK++HPNI  + G ICLDILKD+WSPAL ++T L+SIQALLSAP P DP    +A+ +  +    V TA+ WT  +A
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 56/137 (40.88%), Postives = 92/137 (67.15%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 497
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP+ +PYE G F+L L   EDYP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  +K  +++ ++  KE
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKE 143          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 65/147 (44.22%), Postives = 92/147 (62.59%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPG---ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI +E + +L         I     ++N       I GP  +PYEGG ++LE+ +PE YP + PKVRF+TKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QALL+A  PDDP    +A  +K +     +TA+ W  +YA
Sbjct:    7 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 65/147 (44.22%), Postives = 92/147 (62.59%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPG---ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI +E + +L         I     ++N       I GP  +PYEGG ++LE+ +PE YP + PKVRF+TKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QALL+A  PDDP    +A  +K +     +TA+ W  +YA
Sbjct:    7 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 65/147 (44.22%), Postives = 92/147 (62.59%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPG---ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI +E + +L         I     ++N       I GP  +PYEGG ++LE+ +PE YP + PKVRF+TKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QALL+A  PDDP    +A  +K +     +TA+ W  +YA
Sbjct:    7 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 62/150 (41.33%), Postives = 90/150 (60.00%), Query Frame = 3
Query:   72 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 518
            S N  RRI KE   +  +   GI      D++ +   M  GP  +PYEGG F +++ +P DYP   PK+ F TKIYHPN+  + G ICLDILKD+WSP   +++ L+S+Q+LL  P P +P    +A+ +  +  + V TA+EWT  YA+
Sbjct:    2 SDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAA 151          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.591e-29
Identity = 56/137 (40.88%), Postives = 92/137 (67.15%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 497
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP+ +PYE G F+L L   E+YP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  +K  +++ V+  KE
Sbjct:    7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.591e-29
Identity = 56/137 (40.88%), Postives = 92/137 (67.15%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 497
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP+ +PYE G F+L L   E+YP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  +K  +++ V+  KE
Sbjct:    7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 55/136 (40.44%), Postives = 89/136 (65.44%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAK 494
            RR++++ +RL  +P  G+S +P ++N+  +N +I GP  +P+E G FKL +   E+YP   P VRF++K++HPN+   G ICLDIL+++WSP   +  +L SIQ+LLS PNP+ P +   A+ +K +  E  +  K
Sbjct:    7 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVK 142          
The following BLAST results are available for this feature:
BLAST of FC923499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UB2E1_HUMAN7.042e-3148.61Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC27_ARATH5.961e-3045.83Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC2_CANGA2.959e-2940.88Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBE2K_MOUSE5.047e-2944.22Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN5.047e-2944.22Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN5.047e-2944.22Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC1_SCHPO5.047e-2941.33Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC2_YEAST6.591e-2940.88Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO6.591e-2940.88Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBCD6_DROME1.124e-2840.44Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionC31705G01EF StrClemenN Citrus clementina cDNA clone C31705G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923499 ID=FC923499; Name=FC923499; organism=Citrus clementina; type=EST; length=688bp
GGAGGGAGAGGGAAAAAAAGACGATCGATTTCTGACTCATCTCTGTAAAA
TCTCTTGGAATTCCGATGGCTAGTGGCAACCTCCCTCGCAGAATTGTCAA
GGAAACCCAGCGGCTGCTCAGTGAACCAGCTCCGGGCATTAGTGCTTCTC
CTGCCGAAGACAACATGCGATATTTTAATGTAATGATTCTTGGTCCATCT
CAGTCTCCTTATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTTTGCCTGA
AGATTATCCAATGTCCGCTCCTAAGGTTCGATTTCTGACCAAAATATATC
ATCCTAACATAGACAAGCTTGGAAGGATATGCCTTGATATTTTGAAAGAT
AAATGGAGTCCCGCCCTGCAAATCCGCACAGTCCTGCTGAGTATCCAAGC
TCTTTTGAGTGCTCCGAACCCAGACGATCCACTTTCTGATAACATTGCAA
AGCATTGGAAGGCAGATGAGACTGAAGCTGTTGAAACTGCGAAGGAATGG
ACCCGGTTATATGCAAGTGATGGGTGAAGGCTAGAGCTTGTTCGAGAATA
TCTCTCTACAAGTTTATGTTAAAAACACTAATTGATGTATGAACAGATGT
GTAAAAATGTTTCTCGGCCGGGGTATTTACTCTTAGTTCCTGGATATCTC
CTACGGGTATTAAATGGTTTAAATCCATTGGATTTTGT
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