FC923499

Overview
NameFC923499
Unique NameFC923499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 55/137 (40.15%), Postives = 92/137 (67.15%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 497
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP+ +PYE G F+L L   E+YP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  ++  +++ V+  KE
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKE 143          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 61/143 (42.66%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +RI +E   L  +P P  SA P  DN+ ++   I+GPS +PYEGG+F L++  P DYP   PK+ F T+IYH N+D  G + ++IL+D WSPAL I  VL +I+++   P P  P    IA+ +  D  +  E AKEWT  +A
Sbjct:   39 KRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 54/130 (41.54%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 476
            RR++++ +RL  +P  G+S +P+E+N+  +N +I GP  +P+E G FKL +   E+YP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ ++ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 54/130 (41.54%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 476
            RR++++ +RL  +P  G+S +P+E+N+  +N +I GP  +P+E G FKL +   E+YP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ ++ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 54/130 (41.54%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 476
            RR++++ +RL  +P  G+S +P+E+N+  +N +I GP  +P+E G FKL +   E+YP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ ++ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 54/130 (41.54%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 476
            RR++++ +RL  +P  G+S +P+E+N+  +N +I GP  +P+E G FKL +   E+YP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ ++ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 54/130 (41.54%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 476
            RR++++ +RL  +P  G+S +P+E+N+  +N +I GP  +P+E G FKL +   E+YP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ ++ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 53/130 (40.77%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 476
            RR++++ +RL  +P  G+S +P+E+N+  +N +I GP  +P+E G FKL +   E+YP   P VRF++K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ ++ E
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 53/130 (40.77%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 476
            RR++++ +RL  +P  G+S +P+E+N+  +N +I GP  +P+E G FKL +   E+YP   P VRF++K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ ++ E
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 55/136 (40.44%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   87 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAK 494
            +R++++ +RL ++P  GIS +P  DN+  +N +I GP+ +P+E G FKL L   E YP   P V+FL+K++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A  ++ +  E V   K
Sbjct:    7 KRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVK 142          
The following BLAST results are available for this feature:
BLAST of FC923499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC2_KLULA1.918e-2840.15Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
COP10_ARATH1.918e-2842.66Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBE2B_RAT2.505e-2841.54Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT2.505e-2841.54Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE2.505e-2841.54Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN2.505e-2841.54Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN2.505e-2841.54Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBE2A_MOUSE3.271e-2840.77Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN3.271e-2840.77Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_USTMA3.271e-2840.44Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]

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Properties
Property NameValue
Genbank descriptionC31705G01EF StrClemenN Citrus clementina cDNA clone C31705G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923499 ID=FC923499; Name=FC923499; organism=Citrus clementina; type=EST; length=688bp
GGAGGGAGAGGGAAAAAAAGACGATCGATTTCTGACTCATCTCTGTAAAA
TCTCTTGGAATTCCGATGGCTAGTGGCAACCTCCCTCGCAGAATTGTCAA
GGAAACCCAGCGGCTGCTCAGTGAACCAGCTCCGGGCATTAGTGCTTCTC
CTGCCGAAGACAACATGCGATATTTTAATGTAATGATTCTTGGTCCATCT
CAGTCTCCTTATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTTTGCCTGA
AGATTATCCAATGTCCGCTCCTAAGGTTCGATTTCTGACCAAAATATATC
ATCCTAACATAGACAAGCTTGGAAGGATATGCCTTGATATTTTGAAAGAT
AAATGGAGTCCCGCCCTGCAAATCCGCACAGTCCTGCTGAGTATCCAAGC
TCTTTTGAGTGCTCCGAACCCAGACGATCCACTTTCTGATAACATTGCAA
AGCATTGGAAGGCAGATGAGACTGAAGCTGTTGAAACTGCGAAGGAATGG
ACCCGGTTATATGCAAGTGATGGGTGAAGGCTAGAGCTTGTTCGAGAATA
TCTCTCTACAAGTTTATGTTAAAAACACTAATTGATGTATGAACAGATGT
GTAAAAATGTTTCTCGGCCGGGGTATTTACTCTTAGTTCCTGGATATCTC
CTACGGGTATTAAATGGTTTAAATCCATTGGATTTTGT
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