FC923501

Overview
NameFC923501
Unique NameFC923501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.786e-49
Identity = 103/240 (42.92%), Postives = 146/240 (60.83%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKIL-KPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRL---GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            R E+  + + F   L+ A    +  W+EL  DI  G LSS+I   +I+  MS IL KP  ELA+ +   CS   NW G+I +++PN KYL  I+TG+M  Y+  L +Y+G LP+ S  Y SSE + G N+NP   P   ++ + PN+ YFEF+P      G +E+  L      V L +V+VG+EYE+++T  AGLYRYR+GD+++V GFHNS P+ KFI R N+  +I  DK  E DLQ
Sbjct:  219 RHEVNRLGAVFPSGLLRAISFLQNNWKELSQDISTGTLSSKIFDHAIKTRMSNILNKPDQELAEFLIGVCSQ-ENWEGIITKIWPNTKYLDVIVTGAMAEYIPMLEYYSGGLPMASMIYASSESYFGINLNPMCKPSEVSYTIFPNMAYFEFLPHNHDGDGGVEATSL------VELADVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRENVLLSIESDKTDEADLQ 451          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.106e-49
Identity = 96/237 (40.51%), Postives = 145/237 (61.18%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILK-PKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            R E+  V + FA  L+ A R  +L W EL  DIR G LS+++T PSIR A++++L  P  ELA  +  +C G   W G+I  ++PN KYL  I+TG+M  Y+  L+ Y+G LP+    Y SSE + G N+ P   P   ++ ++PN+GYFE +P              P+ V L + +VG EYE+++T  AGL RYR+GD+++V GFHN+ P+ +F+ R+N+  +I+ DK  E +LQ
Sbjct:  230 RAEVLRVGAVFASGLLRAIRFLQLHWRELAHDIRTGTLSAKVTEPSIRDAVAEVLAAPDAELAAFVEAEC-GKDKWEGIITRMWPNTKYLDVIVTGAMAQYIPTLKFYSGGLPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFELMPHDPDAPPLPRDAPPPRLVDLADAEVGREYELVITTYAGLCRYRVGDILQVTGFHNAAPQFRFVRRKNVLLSIDSDKTDEAELQ 465          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH39_ARATH (Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.383e-48
Identity = 106/247 (42.91%), Postives = 151/247 (61.13%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKIL-KPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYA-GDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQ-RLGNL------ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQLS 718
            R ++  + + FA + + A    E  W +LC+DIR G L+  IT P  + AMS +L  P PELA  I + C G S+W G++ +L+P AK++  ++TGSM  Y+  L  ++ G +PL+   Y SSE + G NV P   P    F +LPN+ YFEFIP  + G L      + QV C   K V L  VK+G  YE++VT  AGLYRYR+GDV++V GF+N  P+ +FICRRN+  +I++DK  E+DL  S
Sbjct:  208 RHKVMRLGAVFASAFLRAISYLEKKWSQLCEDIRTGSLNPMITDPGCQMAMSCLLMSPNPELASEIEEIC-GRSSWKGILCQLWPKAKFIEAVVTGSMAQYIPALEFFSQGKIPLVCPMYASSETYFGVNVEPLSKPSDVVFTLLPNMCYFEFIPLGKNGTLSFDLDDDEQVPC--DKVVDLVNVKLGRYYELVVTTFAGLYRYRIGDVLQVAGFYNGAPQFRFICRRNVVLSIDLDKTNEEDLHRS 451          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH311_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.608e-47
Identity = 102/242 (42.15%), Postives = 145/242 (59.92%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILK-PKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGD-LPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLG-NLESQVLCIE-PKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQLS 718
            R+ +  + + FA + + +    E  W +L +DIR G L+S IT P+ R AM   L  P PELAD +   CS   +W G++  L+PN KY+  ++TG+M  Y+  L  Y G  +P +   Y SSE + G N++P   P   ++ +LPN+ YFEFIP   G  L      IE  K V L +VKVG  YE++VT  +GLYRYR+GDV++V GF+N  P+ KFICRRN+  +I+ DK  E+DL  S
Sbjct:  210 RQHVLRIGAVFASAFLRSISFLEQHWRDLVNDIRIGQLNSSITSPACRLAMLNFLALPNPELADQVEAICS-CGSWKGILGRLWPNVKYIEAVLTGTMAQYIPMLEFYGGGAIPFVCTMYASSESYFGVNLSPLCSPADVSYTILPNMAYFEFIPLEDGLRLTDHEEVIENDKLVSLVDVKVGCYYELVVTTFSGLYRYRVGDVLQVTGFYNRAPQFKFICRRNVILSIDSDKTNEEDLHNS 450          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH39_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.9 OS=Oryza sativa subsp. japonica GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.207e-46
Identity = 89/235 (37.87%), Postives = 145/235 (61.70%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDL 709
            R ++    + FA +LV A R  +L W +L  DI  G L   +  PS+R A+S IL+   ELA+ +  +CS   +W G+I  ++PN KY+  I+TG+M  Y++ L++Y+G LP++S  Y SSE + G N+ P   P   ++ ++PN  YFEF+P  +G +      ++     L  V+VG EYE+++T  AGL RYR+GDV++V GFHN+ P+ +F+ R+++  ++ +DK  E +L
Sbjct:   62 RHDVVRFGAVFAAALVRAIRFLQLNWGQLAADIEAGELGPHVADPSVREAVSGILRSDAELAEFVRIECSK-GDWAGIITRIWPNTKYVDAIVTGAMAQYIRTLQYYSGGLPIVSTSYASSECFFGINLRPVCDPSEVSYTIMPNTAYFEFLP--VGEVVDATNLVD-----LARVEVGREYEVVITTYAGLSRYRVGDVLRVTGFHNAAPQFRFVRRQSVLLSVELDKTDEAEL 288          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH317_ARATH (Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45
Identity = 99/248 (39.92%), Postives = 144/248 (58.06%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILK-PKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP------------QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDL 709
            R  +  V + FA + + A +  E  ++ELC DIR G ++S IT  S R ++  IL  P  ELAD I  +C+  S W G++  ++P AKY+  I+TGSM  Y+  L  Y+G LPL+S  Y SSE + G N+NP   P   ++ +LPN+ YFEF+P                  +      E   V L  V+VG+ YEI++T   GLYRYR+GD++KV GFHN  P+ +F+ RRN+  +I+ DK +E+DL
Sbjct:  212 RSHVLRVGAVFASAFLRAVKFLEDHYKELCADIRTGTVTSWITDSSCRDSVLSILNGPNQELADEIESECAEKS-WEGILRRIWPKAKYVEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLNPLCDPADVSYTLLPNMAYFEFLPVDDKSHEEIHFATHSNTDDDDDALKEDLIVNLVNVEVGQYYEIVITTFTGLYRYRVGDILKVTGFHNKAPQFRFVQRRNVVLSIDTDKTSEEDL 458          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH34_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.524e-44
Identity = 95/239 (39.75%), Postives = 139/239 (58.16%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILK-PKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKP---VGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDL 709
            R ++  V + FA   + A R  E  W  LC DIR G L   +T P++R A+ ++L+   P LAD I  +C+  S W G+I  ++P+ KY+  I+TG+M  Y+  L  Y G LPL    Y SSE + G N+NP   P    + ++P + YFEF+P   G   + V   EP     V L +VK+G EYE++VT  +GLYRYR+GDV++V GF N+ P   F+ R+N+  +I+ DK  E +L
Sbjct:  226 RADVLRVGAVFASGFLRAIRFLEKHWPSLCRDIRAGELDGGVTDPAVRGAVGRVLRGADPALADAIEAECARPS-WQGIIRRVWPSTKYIDVIVTGAMAQYIPTLEFYGGGLPLACTMYASSECYFGLNLNPMCKPSEVAYTLIPTMCYFEFLPVNSG--ANDVAAPEPDHRGLVDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNAAPMFAFVRRKNVALSIDSDKTDEAEL 461          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.284e-43
Identity = 90/235 (38.30%), Postives = 132/235 (56.17%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDL 709
            R ++  V + FA   + A    E  W  LC DIR G L   IT   +R A+ ++L+  P LAD I  +C+  S W G+I  L+P  KY+  I+TG+M  Y+  L  Y G LPL    Y SSE + G N+NP   P    + ++P + Y+EF+P    N  ++        V L +VK+G EYE++VT  +GLYRYR+GDV++V GF N  P   F+ R+N+  +++ DK  E +L
Sbjct:  222 RADVLRVGAVFASGFLRAIHFLEKHWARLCHDIRTGELDPEITDRVVRDAVGRVLRADPALADAIEDECARAS-WEGIIRRLWPRTKYIDVIVTGTMSQYIPTLEFYGGGLPLTCTMYASSECYFGLNLNPMCKPSDVAYTLIPTMCYYEFLPVNCNNATAE--ASHRDLVDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNKAPMFSFVRRQNVALSVDSDKTDETEL 453          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH37_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 98/244 (40.16%), Postives = 138/244 (56.56%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSK--ILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI-------PQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDL 709
            R  +  V ++FA  LV   +  E  WEE+C +IR G LS  IT   +R A++   +    P LAD I  +C+    W G++  L+P A+Y+  I+TGSM  Y+  L  Y G LPL+S  Y S+E   G N+ P  PP   ++A+LPNI YFEF+        +  G         E K V L +VKVG  YE+IVT  AGLYRYR+GD+  V GF+N+TP   F  R ++  +I+ +K +E+DL
Sbjct:  227 RCRVDRVGASFAAGLVRGIKFLENHWEEMCFNIRSGQLSDWITHTPLRDAVTGQYLQGSNPALADEIASECAR-KPWDGIVRRLWPRARYIRTIVTGSMSQYIPILEVYGGGLPLVSPIYASTECAAGINLRPLDPPSHVSYALLPNIAYFEFLEVMDENGEKVQGTTRLDDNLGEVKVVDLVDVKVGRCYELIVTTFAGLYRYRVGDLFTVSGFYNATPLFHFSGRHDVILSIDYEKISEEDL 469          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH36_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.890e-38
Identity = 82/221 (37.10%), Postives = 133/221 (60.18%), Query Frame = 2
Query:    8 EEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREG-VLSSRITVPSIRAAMSK--ILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGD-LPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICR 658
            + +  + + +A +L  A R  +  W +LCDD+  G V +  +T  ++R A+    +  P PELA  + + C    +W G++ +L+P+A+Y+S + TG+ME Y   ++H+AG+ LP++  DY +SE  IG N+  + PPE  T+ +LP   YFEFIP  +          EP  V +  V+ G+ YE++ T   GLYRY++GDVVK+ GFH+S+P L+F+ R
Sbjct:   51 DAVDCIRAPYAAALARALRLLQSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRICER-DDWRGVLRQLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGINLERTSPPEETTYVLLPRAAYFEFIPFDMDAAGRGAAAAEP--VDIAGVEAGKTYELVATTFRGLYRYKVGDVVKIAGFHHSSPRLQFVTR 268          
The following BLAST results are available for this feature:
BLAST of FC923501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GH34_ARATH2.786e-4942.92Indole-3-acetic acid-amido synthetase GH3.4 OS=Ara... [more]
GH32_ORYSJ8.106e-4940.51Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH39_ARATH1.383e-4842.91Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH311_ORYSJ2.608e-4742.15Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH39_ORYSJ2.207e-4637.87Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH317_ARATH7.101e-4539.92Indole-3-acetic acid-amido synthetase GH3.17 OS=Ar... [more]
GH34_ORYSJ3.524e-4439.75Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH31_ORYSJ2.284e-4338.30Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH37_ORYSJ2.001e-3940.16Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ORYSJ2.890e-3837.10Probable indole-3-acetic acid-amido synthetase GH3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705G03EF StrClemenN Citrus clementina cDNA clone C31705G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923501 ID=FC923501; Name=FC923501; organism=Citrus clementina; type=EST; length=720bp
CTTCAGGGAAGAGATTCAACTTGTATTCTCAACCTTTGCCCATAGTCTTG
TTCATGCTTTTCGGACATTTGAGCTCGTTTGGGAAGAGCTATGTGATGAT
ATAAGGGAAGGGGTTCTTTCCAGCAGAATCACTGTCCCTTCAATCAGGGC
GGCTATGTCAAAAATTCTCAAGCCAAAGCCTGAATTGGCCGATTTGATCC
ATAAAAAATGCTCAGGATTGAGTAATTGGTATGGGTTAATACCTGAGCTT
TTTCCTAATGCGAAGTACCTGTCTAGAATCATGACTGGGTCAATGGAGCA
TTATCTGAAAAAGTTGAGGCACTATGCAGGGGACCTTCCTCTTATGAGCG
CTGATTATGGTTCTTCTGAGGGGTGGATTGGAGCAAATGTGAATCCAAGT
TTGCCCCCAGAGTTGGCTACGTTTGCTGTGCTTCCTAATATCGGATATTT
TGAGTTCATTCCTCAGAGGTTGGGGAATCTTGAGAGCCAAGTTCTTTGCA
TAGAACCCAAGCCAGTAGGATTGACTGAAGTCAAAGTTGGGGAAGAGTAT
GAGATCATTGTCACCAATGTTGCAGGTTTGTATCGGTACCGGCTAGGGGA
TGTGGTGAAGGTTATGGGCTTCCATAATTCAACCCCAGAACTCAAATTTA
TTTGCAGGAGGAACCTATTTGCTACCATAAACATTGACAAGAACACTGAG
AAGGATTTGCAGCTATCTGT
back to top