FC923501

Overview
NameFC923501
Unique NameFC923501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH310_ORYSJ (Putative indole-3-acetic acid-amido synthetase GH3.10 OS=Oryza sativa subsp. japonica GN=GH3.10 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 86/236 (36.44%), Postives = 131/236 (55.51%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            R ++  V + FA +LV A R  +L W +L  DI  G L+ R+T PS R                   +CS   +W G++  L+P  K L+ ++TG M  Y+  L++Y+G LP++S  Y SSE + G N+ P   P   ++ ++PN  YFEF+P  +G        +E     L  V+ G EYE++VT  AGL RYR+GDV+ V GFHN+ P+ +F+ R+++  +I  DK  E +LQ
Sbjct:  225 RHDVLRVGAVFAAALVRAIRFLQLNWAQLAADIETGELNPRVTDPSDR-------------------ECSR-GDWTGIVTRLWPKTKCLNVVVTGVMAQYIPTLQYYSGGLPIVSGMYASSECFFGLNLRPLCGPSEVSYTIMPNTAYFEFLP--VGEAVDASNLVE-----LARVEDGREYEVVVTTYAGLNRYRVGDVLCVTGFHNAAPQFRFVRRQSVLLSIEADKTDEAELQ 433          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH313_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.13 OS=Oryza sativa subsp. japonica GN=GH3.13 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.915e-27
Identity = 73/194 (37.63%), Postives = 104/194 (53.61%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRI-TVPSIRAAMSKILKPK--PELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG 577
            R E+  V + FA + + A +  E  W  LC DIR G     + T  + R A+  +L  +  P+LAD I  +C G S W G++  L+P  KY+  I+TGSM  Y+  L  Y G LPL+S  Y SSE + G N+ P  PPE   + +LPN+ Y+EFI         +V   + + V L  V+VG  YE++VT   G
Sbjct:  252 RGEVLRVGAVFASAFLRAVKFLEGHWRALCADIRAGRADPAVVTDAACRGAVDAVLAARADPDLADAIAAECGGAS-WRGIVRRLWPRTKYIDVIVTGSMAQYIPLLEFYGGGLPLVSTMYASSESYFGINLRPLDPPEEVVYTLLPNMCYYEFIKVEKDGDGEKVR--DGEVVDLVGVEVGAYYELVVTTFTG 442          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GHDC_MOUSE (GH3 domain-containing protein OS=Mus musculus GN=Ghdc PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 59/217 (27.19%), Postives = 98/217 (45.16%), Query Frame = 2
Query:   38 AHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRH-YAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINI 685
            A  L+  F   E   EEL + I  G+L + +  P   A + + L+  P                 GL   L+P  + +  + +G     +  LR  +   L   S  Y +S G +  N+ P  P    ++ + P + + E +P + G  E     +      LT+ +  +EYE+++TN   L R RLGDVV+V+G +N  P ++F CR  L  T+N+
Sbjct:  204 AVELLDVFVGLEADGEELAEAIAAGILGTLL--PKRAAELKEALEQGPR----------------GLARRLWPKLQVVVTLDSGGQAEAVAALRVLWCQGLAFFSPAYAASGGVVALNLWPERPQ--GSYLLPPGVPFIELLPIKEGTQEEAASTLL-----LTDAQREKEYELVLTNHTSLTRCRLGDVVQVVGTYNQCPVVRFTCR--LGQTLNV 393          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GHDC_HUMAN (GH3 domain-containing protein OS=Homo sapiens GN=GHDC PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  233 GLIPELFPNAKYLSRIMTGSMEHYLKKLRH-YAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICR 658
            GL   L+P  + +  +  G     +  L   +   L   S  Y +S G +G N+ P  P  L  + + P   + E +P + G  E     +      L E + G+EYE+++T+ A L R RLGDVV+V+G +N  P ++FICR
Sbjct:  250 GLALRLWPKLQVVVTLDAGGQAEAVAALGALWCQGLAFFSPAYAASGGVLGLNLQPEQPHGL--YLLPPGAPFIELLPVKEGTQEEAASTLL-----LAEAQQGKEYELVLTDRASLTRCRLGDVVRVVGAYNQCPVVRFICR 385          
The following BLAST results are available for this feature:
BLAST of FC923501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GH310_ORYSJ3.195e-3736.44Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH313_ORYSJ3.915e-2737.63Probable indole-3-acetic acid-amido synthetase GH3... [more]
GHDC_MOUSE6.068e-1227.19GH3 domain-containing protein OS=Mus musculus GN=G... [more]
GHDC_HUMAN2.306e-1131.47GH3 domain-containing protein OS=Homo sapiens GN=G... [more]

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Properties
Property NameValue
Genbank descriptionC31705G03EF StrClemenN Citrus clementina cDNA clone C31705G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923501 ID=FC923501; Name=FC923501; organism=Citrus clementina; type=EST; length=720bp
CTTCAGGGAAGAGATTCAACTTGTATTCTCAACCTTTGCCCATAGTCTTG
TTCATGCTTTTCGGACATTTGAGCTCGTTTGGGAAGAGCTATGTGATGAT
ATAAGGGAAGGGGTTCTTTCCAGCAGAATCACTGTCCCTTCAATCAGGGC
GGCTATGTCAAAAATTCTCAAGCCAAAGCCTGAATTGGCCGATTTGATCC
ATAAAAAATGCTCAGGATTGAGTAATTGGTATGGGTTAATACCTGAGCTT
TTTCCTAATGCGAAGTACCTGTCTAGAATCATGACTGGGTCAATGGAGCA
TTATCTGAAAAAGTTGAGGCACTATGCAGGGGACCTTCCTCTTATGAGCG
CTGATTATGGTTCTTCTGAGGGGTGGATTGGAGCAAATGTGAATCCAAGT
TTGCCCCCAGAGTTGGCTACGTTTGCTGTGCTTCCTAATATCGGATATTT
TGAGTTCATTCCTCAGAGGTTGGGGAATCTTGAGAGCCAAGTTCTTTGCA
TAGAACCCAAGCCAGTAGGATTGACTGAAGTCAAAGTTGGGGAAGAGTAT
GAGATCATTGTCACCAATGTTGCAGGTTTGTATCGGTACCGGCTAGGGGA
TGTGGTGAAGGTTATGGGCTTCCATAATTCAACCCCAGAACTCAAATTTA
TTTGCAGGAGGAACCTATTTGCTACCATAAACATTGACAAGAACACTGAG
AAGGATTTGCAGCTATCTGT
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