FC923512

Overview
NameFC923512
Unique NameFC923512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923512 vs. ExPASy Swiss-Prot
Match: YHFR_SALTI (Uncharacterized protein yfhR OS=Salmonella typhi GN=yhfR PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.408e-16
Identity = 56/187 (29.95%), Postives = 96/187 (51.34%), Query Frame = 2
Query:   14 LQRLHCNVFMLSYRGYGESDGYPSQHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGG-----AVG-----AVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQ-PILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHMDTW 541
            L   + N+FM  YRG+GES+G PSQ G+  D ++A++++  R D++  R+V+ G+SLGG     AVG     A +   +   + A++L++TF+S   +A  ++P       GSG        +L+   +S    +  +   P+L L G  D ++P    + LYA A    +    +  P G H+D +
Sbjct:  101 LPERNVNLFMFDYRGFGESEGTPSQEGLLNDTKSAIDYVRHRADVNPERLVLLGQSLGGNNVLAAVGHCVGCANMRYADQAGIRAIVLDSTFSSYSSIANQMIP-------GSG--------YLLDDRYSADRNIASVSPIPVLILHGTADHVIPWQDSEKLYALAREPKQK---IFIPDGDHIDAF 269          
BLAST of FC923512 vs. ExPASy Swiss-Prot
Match: YFHR_SALTY (Uncharacterized protein yfhR OS=Salmonella typhimurium GN=yfhR PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 2
Query:   14 LQRLHCNVFMLSYRGYGESDGYPSQHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGG-----AVG-----AVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQ-PILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHMDTW 541
            L   + N+FM  YRG+GES+G PSQ G+  D ++A++++  R D++  R+V+ G+SLGG     AVG     A +   +   + A+IL++TF S   +A  ++P       GSG        +L+   +S    +  +   P+L L G  D ++P    + LYA A    +    +  P G H+D +
Sbjct:  101 LPERNVNLFMFDYRGFGESEGTPSQEGLLDDTKSAIDYVRHRADVNPERLVLLGQSLGGNNVLAAVGHCVGCANMRYADQAGIRAIILDSTFLSYSSIANQMIP-------GSG--------YLLDDRYSADRNIASVSPIPVLILHGTADHVIPWQDSEKLYALAREPKQK---IFIPDGDHIDAF 269          
The following BLAST results are available for this feature:
BLAST of FC923512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YHFR_SALTI9.408e-1629.95Uncharacterized protein yfhR OS=Salmonella typhi G... [more]
YFHR_SALTY2.096e-1530.48Uncharacterized protein yfhR OS=Salmonella typhimu... [more]

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Properties
Property NameValue
Genbank descriptionC31705H03EF StrClemenN Citrus clementina cDNA clone C31705H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923512 ID=FC923512; Name=FC923512; organism=Citrus clementina; type=EST; length=734bp
GGTTCGCATAATGTTACAAAGGTTGCACTGCAATGTATTCATGCTTTCAT
ATCGTGGTTATGGAGAAAGTGATGGCTATCCTTCTCAGCATGGAATTACA
AGGGATGCTCAGGCAGCATTGGAGCATCTTTCTCAAAGGACCGATATAGA
CACGACTAGAATAGTTGTATTTGGGAGATCACTAGGAGGTGCCGTTGGAG
CTGTGCTTACTAAGAATAATCCGGATAAGGTCGCTGCACTGATACTGGAG
AATACTTTCACATCAATACTGGACATGGCTGGAGTTCTTCTGCCATTCCT
GAAGTGGTTTATTGGGGGCAGTGGTTCAAAAGGTCCAAGAATTCTTAATT
TTCTTGTACGCTCTCCTTGGAGTACAATTGATGTTGTTGGTGAGATTAAG
CAGCCAATCCTTTTTCTCTCTGGGTTGCAAGATGAGATGGTTCCTCCATC
ACACATGCAAATGCTGTATGCTAAAGCAGCTGCTCGTAACAAGCATTGCA
AATTTGTGGAATTTCCTACTGGCATGCATATGGATACTTGGTTGGCTGGT
GGTGATCAGTATTGGAGATCAATTCAGGAGTTCCTGGCAGAACATGTTAG
AAAGAAAAAGGAAAGTGAAACGTCAGGCAATGACAATGATTCCGAGGGGA
GGTGACTGGTGTTGACATGCAAACTATTGGGTTTTATTGATTGTCTCACA
CAAGGATCTCAAACAATTTCTGCCTTTTTCATTT
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