FC923513

Overview
NameFC923513
Unique NameFC923513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_DICDI (Eukaryotic translation initiation factor 2 subunit 2 OS=Dictyostelium discoideum GN=eif2s2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.711e-28
Identity = 56/107 (52.34%), Postives = 84/107 (78.50%), Query Frame = 3
Query:  420 ADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            +DG    +   PW G+DRDY+Y EL  R++++L+ NNP+L  D++RT M+PPQV+REGTKKT++ NF ++C T++R+ +HV  ++ AELGT+GS+DG QRLV++GRF
Sbjct:  144 SDGDTFVQGTIPWAGTDRDYKYSELTYRIYHLLQANNPDLISDQKRT-MKPPQVMREGTKKTIWANFAEICGTLNRKVEHVYNYVFAELGTNGSIDGNQRLVIRGRF 249          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_SCHPO (Probable eukaryotic translation initiation factor 2 subunit beta OS=Schizosaccharomyces pombe GN=tif212 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 86/229 (37.55%), Postives = 109/229 (47.60%), Query Frame = 3
Query:   75 PQAVSDGREDLSFDSRNSTMTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETLSVSEGLESTFTGLXXXXXXP-------VESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            P+A S G  D     R S+  D      + EV EL     +          +  S  S     E TE ++   G E  F+ +               E  L     GDA  DL     + +           + W  SDRDY Y ELL R F +LR NNPELAG++R+  + PP V REG KKT+F N  D+ K MHR  DHV+ FL AELGTSGS+DG  RL++KGRF
Sbjct:   42 PEASSAGATDEDDSERKSSAKDLTTPVTEGEVDELKDMFSSMKK-------KKKSKKSSASAEEQTEDITTESG-ELDFSSMKKKKKKKKSADLSAFEKELEASSTGDATSDLSKQTFDSENMG-------EHAWLKSDRDYYYPELLNRFFTLLRTNNPELAGEKRKYTIVPPSVHREG-KKTIFANISDISKRMHRSLDHVIQFLFAELGTSGSVDGSSRLIIKGRF 254          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_CAEEL (Eukaryotic translation initiation factor 2 subunit 2 OS=Caenorhabditis elegans GN=K04G2.1 PE=3 SV=4)

HSP 1 Score: 102.834 bits (255), Expect = 1.972e-21
Identity = 46/94 (48.94%), Postives = 70/94 (74.47%), Query Frame = 3
Query:  459 EGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQR-LVVKGRF 737
            +G+  DY YEE L  V+ ++++ NP+ AGD+++  ++ P+V R G+KKT F NF+++C+ M RQ  HV+ FLLAELGT+GS+DG   L+VKGR+
Sbjct:   81 KGAWPDYTYEEALTLVYQVMKDKNPDFAGDKKKFAIKLPEVARAGSKKTAFSNFLEICRLMKRQDKHVLQFLLAELGTTGSIDGSNCLIVKGRW 174          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_YEAST (Eukaryotic translation initiation factor 2 subunit beta OS=Saccharomyces cerevisiae GN=SUI3 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.576e-21
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 3
Query:  483 YEELLGRVFNILRENNPELAGDRRRTVMR--PPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ-RLVVKGRF 737
            Y ELL R FNILR NNPELAGDR     R  PP  LR+G KKT+F N  D+ + +HR P+H++ +L AELGTSGS+DGQ RLV+KG+F
Sbjct:  131 YSELLSRFFNILRTNNPELAGDRSGPKFRIPPPVCLRDG-KKTIFSNIQDIAEKLHRSPEHLIQYLFAELGTSGSVDGQKRLVIKGKF 217          
The following BLAST results are available for this feature:
BLAST of FC923513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IF2B_DICDI3.711e-2852.34Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_SCHPO3.141e-2737.55Probable eukaryotic translation initiation factor ... [more]
IF2B_CAEEL1.972e-2148.94Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_YEAST2.576e-2160.23Eukaryotic translation initiation factor 2 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705H04EF StrClemenN Citrus clementina cDNA clone C31705H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923513 ID=FC923513; Name=FC923513; organism=Citrus clementina; type=EST; length=738bp
GATTCGTTATACAGACAGCAAGGATCGAAGAAAAGATAACTCTGTTAAGC
CTGTATTCGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGA
AGATCTCAGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAG
TAGATGTGAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAA
AAGAAGAAGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGT
GGACAAACTGGCCGAGATAACTGAAACTTTATCAGTCTCTGAGGGGCTTG
AAAGTACTTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGC
AGTCTATTGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCA
CGTGGGTGAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTT
ATCCATGGGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGT
AGGGTCTTTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAG
GCGTAGAACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGA
AAACTGTTTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAG
CCAGATCATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTC
ACTGGACGGACAAAGACTGGTCGTGAAGGGCCGATTTG
back to top