FC923514

Overview
NameFC923514
Unique NameFC923514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: STI1_YEAST (Heat shock protein STI1 OS=Saccharomyces cerevisiae GN=STI1 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.424e-42
Identity = 92/228 (40.35%), Postives = 131/228 (57.46%), Query Frame = 2
Query:    2 EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRS 685
            +F++AIEHY+ A EL  +DI+YL NRAA   E G+YE  I   + AVE+GRE+R+D+K+I+++  R G A  K+     D +  IE +QK+LTEHR  D                     +P+ A+E R +G E+F +  +P A++ YTE ++R P+D R YSNRAA   KL + PE + D +K IE DP F + Y RK   Q  +KEY  ALET       D +  +
Sbjct:  277 QFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG----DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 499          

HSP 2 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 37/105 (35.24%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  374 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRT-YSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRS 685
            ADE +++GN  F  + Y +AI+ +T+++  +       YSNR+ACYT L    + L DA++C++++P++SKGY R GA    L + D+A   Y++ L+ D   ++
Sbjct:    5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSETPNHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLGDLDEAESNYKKALELDASNKA 109          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: STI1L_PLAFA (STI1-like protein (Fragment) OS=Plasmodium falciparum PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  374 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRS 685
            A   +E GN+ F++ KY EA++++++++  +P D   YSN +  +  LG   E L+ A+KCI +   + KGY RKG  +  L++   A +TY EGLK DP  +S
Sbjct:    7 AQRLKELGNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNKS 110          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 36/105 (34.29%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  374 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSF 688
            AD+ +++GN   K++ Y  A+  YT+++  +P +   Y NRAA  +KLG   + +KD +K I +D  +SK Y R G     L ++++A+ +YQ+ L  DP+  S+
Sbjct:   85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSY 189          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 34/105 (32.38%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  374 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSF 688
            AD+ +++GN   K++ Y  A+  YT+++  +P +   Y NRAA  +KL    + +KD +K I +D  +SK Y R G     + ++++A+ +YQ+ L  DP+  S+
Sbjct:   85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSY 189          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 34/105 (32.38%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  374 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSF 688
            AD+ +++GN   K++ Y  A+  YT+++  +P +   Y NRAA  +KL    + +KD +K I +D  +SK Y R G     + ++++A+ +YQ+ L  DP+  S+
Sbjct:   85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSY 189          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  374 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 673
            A+E ++  NE FK  KY +AI  YT+++  N ++   Y+NRA  +TKL      ++D  + IE+DP +SKGY R+GA    + ++  AL+ +Q+  K  P
Sbjct:   14 AEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCP 113          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  386 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 673
            +EKGN++FKQ KY EAI+ YT+ +  +P +P   +NRA+ Y +L        D +  I L  T++K Y R+GA +F L++ + A + Y++ L+ +P
Sbjct:  138 KEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEP 233          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 34/96 (35.42%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  386 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 673
            +EKGN++FKQ KY EAI  YT+ +  +P +P   +NRA+ Y +L        D +  + L+ +++K Y+R+GA +F L++ ++A + Y+  L+ +P
Sbjct:  137 KEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEP 232          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: RPAP3_CHICK (RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 36/103 (34.95%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  362 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 670
            D + A  E+EKGN++FKQ  + EAI+ YT  +  +P +P   +NRA+ + ++        D +  + LD  ++K Y R+GA +F LK +  A E Y++ L+ D
Sbjct:  129 DKEKALAEKEKGNKYFKQGNFDEAIKCYTRGMHSDPFNPVLPTNRASAFYRMKKFSVAESDCNLALALDKNYTKAYARRGAARFALKNFQGAKEDYEKVLELD 231          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: SUGT1_DICDI (Protein SUGT1 homolog OS=Dictyostelium discoideum GN=sugt1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 34/103 (33.01%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  380 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSF 688
            E+ ++GN +F  ++Y EA++ Y ++      +   +  R+ C++KL  + E L D +  I+LD   SK Y +KG + F L+E+D AL+T+++G   D +  SF
Sbjct:    2 EQLKEGNSYFVDEQYDEALKCYDKACLELSNNAEAFFKRSQCHSKLSNLKEALSDINTSIKLDSNNSKYYLKKGQLCFELEEFDTALKTFEKGQSIDSENSSF 104          
The following BLAST results are available for this feature:
BLAST of FC923514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
STI1_YEAST5.424e-4240.35Heat shock protein STI1 OS=Saccharomyces cerevisia... [more]
STI1L_PLAFA8.720e-1637.50STI1-like protein (Fragment) OS=Plasmodium falcipa... [more]
SGTB_HUMAN1.259e-1434.29Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_RAT1.066e-1332.38Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_MOUSE1.066e-1332.38Small glutamine-rich tetratricopeptide repeat-cont... [more]
PPP5_SOLLC5.290e-1337.00Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]
RPAP3_MOUSE6.910e-1337.50RNA polymerase II-associated protein 3 OS=Mus musc... [more]
RPAP3_HUMAN2.010e-1235.42RNA polymerase II-associated protein 3 OS=Homo sap... [more]
RPAP3_CHICK2.010e-1234.95RNA polymerase II-associated protein 3 OS=Gallus g... [more]
SUGT1_DICDI2.626e-1233.01Protein SUGT1 homolog OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionC31705H05EF StrClemenN Citrus clementina cDNA clone C31705H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923514 ID=FC923514; Name=FC923514; organism=Citrus clementina; type=EST; length=700bp
GGAATTTGAGAAAGCAATTGAACATTACTCCAGTGCACTGGAGCTCGATG
ATGAGGATATTTCTTACCTGACTAATCGTGCGGCGGTTTATCTCGAAATG
GGCAAGTATGAGGAATGCATCAAGGATTGTGACAAGGCTGTCGAAAGGGG
AAGAGAGCTTAGATCTGACTTTAAGATGATAGCAAGAGCTTTAACTAGGA
AGGGAACTGCTCTGGTGAAAATGGCAAAATGTTCAAAGGACTATGAACCT
GCTATTGAGACTTTCCAGAAAGCTCTAACTGAGCATCGCAACCCAGACAC
GTTGAAAAAACTTAATGAGGCGGAGAAAGCTAAGAAGGAACTCGAGCAAC
AAGAGATTTTTGACCCGAAGATAGCTGATGAGGAGCGTGAGAAAGGAAAT
GAATTTTTTAAGCAGCAGAAGTATCCAGAGGCTATACAACATTATACAGA
ATCATTGAGAAGGAATCCCAAAGATCCAAGGACATACAGTAACAGAGCTG
CCTGCTATACGAAATTGGGGGCCATGCCTGAGGGATTGAAGGATGCAGAT
AAGTGCATTGAGCTTGATCCAACCTTCTCTAAGGGTTATACCAGAAAAGG
AGCCATTCAGTTTTTCTTGAAGGAATATGACAAAGCTCTAGAAACATACC
AGGAGGGGCTAAAGCATGACCCACAAACCAGGAGCTTCTTGATGGCGTCA
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