FC923514

Overview
NameFC923514
Unique NameFC923514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: PPP5_ARATH (Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  362 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 673
            D   A+E + + NE FK  KY  AI  YT+++  N  +   ++NRA  +TKL      ++DA K IE+D  +SKGY R+GA    + ++  AL+ +Q+  +  P
Sbjct:    9 DVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSP 112          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  386 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 673
            +EKGN++FKQ KY EAI+ YT+ +  +P +P   +NRA+ Y +L        D +  I L  +++K Y R+GA +F L++ + A + Y + L+ +P
Sbjct:  137 KEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEP 232          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  377 DEEREKGNEFFKQQKYPEAIQHYTESLR-RNPKDPRTYSNRAACYTKL---GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSFL 691
            +E + +GN +FKQ +Y +AI+ YT+++   N      Y NRAA Y  +    ++ + +KD+ K IEL+ +F KGYTR       L +YD+A      GL  DP+    L
Sbjct:    4 EECKTQGNNYFKQSQYMDAIRCYTQAIELSNGTIAAYYGNRAAAYLAICTKSSLQDSIKDSLKAIELERSFIKGYTRASKAYIHLAQYDQAASIIVRGLVFDPRNNELL 112          

HSP 2 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 31/104 (29.81%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  377 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPK----DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 676
            + ++++GNE+F+ + Y  A   +TE+L  +PK    + + YSNRAA    L  + E + D    + +DP + K Y R+   Q   + Y+ A+  Y++    DP+
Sbjct:  236 ESKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPE 339          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: SGTA_BOVIN (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus GN=SGTA PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 33/109 (30.28%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  362 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSF 688
            D   A+  + +GNE  K + +  A+  Y +++  NP +   + NRAA Y+KLG     ++D ++ I +DP++SK Y R G     L ++ +A+  Y++ L+ DP   ++
Sbjct:   87 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETY 195          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: SUGT1_RAT (Suppressor of G2 allele of SKP1 homolog OS=Rattus norvegicus GN=Sugt1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  431 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSF 688
            A++  T++L +NP D + Y  RA C+  LG   +G+ D  K +EL+P  S    RKG  +++ K+Y  ALET+ EG K D    +F
Sbjct:   30 ALEELTKALEQNPDDAQYYCQRAYCHILLGKYCDGIADVKKSLELNPNNSTALLRKGICEYYEKDYASALETFAEGQKLDGTDTNF 115          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: SGT2_SCHPO (Small glutamine-rich tetratricopeptide repeat-containing protein 2 OS=Schizosaccharomyces pombe GN=sgt2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 36/102 (35.29%), Postives = 55/102 (53.92%), Query Frame = 2
Query:  380 EEREK----GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 673
            EE EK    GN     + Y +A+  YT+++  +P  P  YSNRAA Y +LG     ++DA  C+ LDP  ++ + R G  +  L +   A + Y++GL  DP
Sbjct:   81 EEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDP 182          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: SGTA_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Homo sapiens GN=SGTA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 33/109 (30.28%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  362 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSF 688
            D   A+  + +GNE  K + +  A+  Y +++  NP +   + NRAA Y+KLG     ++D ++ I +DP +SK Y R G     L ++ +A+  Y++ L+ DP   ++
Sbjct:   87 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 195          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: PPP5_RAT (Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  368 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSFLM 694
            K A+E + + N++FK + Y  AI+ Y++++  NP +   Y NR+  Y +       L DA + IELD  + KGY R+ A    L ++  AL  Y+  +K  P  +   M
Sbjct:   26 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKM 134          
BLAST of FC923514 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  368 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQTRSFLM 694
            K A+E + + N++FK + Y  AI+ Y++++  NP +   Y NR+  Y +       L DA + IELD  + KGY R+ A    L ++  AL  Y+  +K  P  +   M
Sbjct:   26 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 134          
The following BLAST results are available for this feature:
BLAST of FC923514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PPP5_ARATH3.429e-1235.58Serine/threonine-protein phosphatase 5 OS=Arabidop... [more]
RPAP3_RAT5.849e-1236.46RNA polymerase II-associated protein 3 OS=Rattus n... [more]
DNJC7_DICDI7.639e-1235.78DnaJ homolog subfamily C member 7 homolog OS=Dicty... [more]
SGTA_BOVIN2.223e-1130.28Small glutamine-rich tetratricopeptide repeat-cont... [more]
SUGT1_RAT3.791e-1138.37Suppressor of G2 allele of SKP1 homolog OS=Rattus ... [more]
SGT2_SCHPO3.791e-1135.29Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_HUMAN4.952e-1130.28Small glutamine-rich tetratricopeptide repeat-cont... [more]
PPP5_RAT6.467e-1132.11Serine/threonine-protein phosphatase 5 OS=Rattus n... [more]
PPP5_HUMAN6.467e-1132.11Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionC31705H05EF StrClemenN Citrus clementina cDNA clone C31705H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923514 ID=FC923514; Name=FC923514; organism=Citrus clementina; type=EST; length=700bp
GGAATTTGAGAAAGCAATTGAACATTACTCCAGTGCACTGGAGCTCGATG
ATGAGGATATTTCTTACCTGACTAATCGTGCGGCGGTTTATCTCGAAATG
GGCAAGTATGAGGAATGCATCAAGGATTGTGACAAGGCTGTCGAAAGGGG
AAGAGAGCTTAGATCTGACTTTAAGATGATAGCAAGAGCTTTAACTAGGA
AGGGAACTGCTCTGGTGAAAATGGCAAAATGTTCAAAGGACTATGAACCT
GCTATTGAGACTTTCCAGAAAGCTCTAACTGAGCATCGCAACCCAGACAC
GTTGAAAAAACTTAATGAGGCGGAGAAAGCTAAGAAGGAACTCGAGCAAC
AAGAGATTTTTGACCCGAAGATAGCTGATGAGGAGCGTGAGAAAGGAAAT
GAATTTTTTAAGCAGCAGAAGTATCCAGAGGCTATACAACATTATACAGA
ATCATTGAGAAGGAATCCCAAAGATCCAAGGACATACAGTAACAGAGCTG
CCTGCTATACGAAATTGGGGGCCATGCCTGAGGGATTGAAGGATGCAGAT
AAGTGCATTGAGCTTGATCCAACCTTCTCTAAGGGTTATACCAGAAAAGG
AGCCATTCAGTTTTTCTTGAAGGAATATGACAAAGCTCTAGAAACATACC
AGGAGGGGCTAAAGCATGACCCACAAACCAGGAGCTTCTTGATGGCGTCA
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