FC923526

Overview
NameFC923526
Unique NameFC923526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SHIFL (Divalent-cation tolerance protein cutA OS=Shigella flexneri GN=cutA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTT-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SHIF8 (Divalent-cation tolerance protein cutA OS=Shigella flexneri serotype 5b (strain 8401) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SHIDS (Divalent-cation tolerance protein cutA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SHIB3 (Divalent-cation tolerance protein cutA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ECOUT (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain UTI89 / UPEC) GN=cutA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTT-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ECOSM (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ECOSE (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain SE11) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ECOLU (Divalent-cation tolerance protein cutA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ECOLI (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain K12) GN=cutA PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ECOLC (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
The following BLAST results are available for this feature:
BLAST of FC923526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_SHIFL3.290e-1840.00Divalent-cation tolerance protein cutA OS=Shigella... [more]
CUTA_SHIF83.290e-1840.00Divalent-cation tolerance protein cutA OS=Shigella... [more]
CUTA_SHIDS3.290e-1840.00Divalent-cation tolerance protein cutA OS=Shigella... [more]
CUTA_SHIB33.290e-1840.00Divalent-cation tolerance protein cutA OS=Shigella... [more]
CUTA_ECOUT3.290e-1840.00Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOSM3.290e-1840.00Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOSE3.290e-1840.00Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOLU3.290e-1840.00Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOLI3.290e-1840.00Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOLC3.290e-1840.00Divalent-cation tolerance protein cutA OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionC31706A09EF StrClemenN Citrus clementina cDNA clone C31706A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923526 ID=FC923526; Name=FC923526; organism=Citrus clementina; type=EST; length=618bp
GGTCCCACTCTCTCTTCTTCCCTCAAAACGGGTTCCGCTCCTTCTCTCCC
GTTCTTCGGATCAAAGTTTAGTAACCAAGCTCGCGCGAAGAGTAGTAACA
CGATCAAAATGGAAGGCAACAGCAACACTGTACCAAGTATTGTAGTTTAT
GTCACCGTTCCTAGCAAAGAAGCAGGAAAGAAACTGGCTGAAAGCATAGT
GAAAGCAAAACTTGCAGCATGTGTGAATCGAGTGCCAGGTATTGAATCTG
TTTACGAGTGGAAGGGAGAGATCCAGACAGATGCTGAAGAACTTCTTATT
ATAAAGACTAGGCAATCCCTTTTGGAAACTCTGACAGAGCATGTCAAGGC
AAATCATGAATATGATGCGCCAGAAGTAATTGCCTTGCCCATCACTGGTG
GCAGCCAGCCATACCTAGAGTGGCTAAAAAGCAGTACAAGGGACTGACTC
CCGCGGATGTAGTGTGATGTAGTGTGTGGACGCTGTAACTGATAAGCTCC
TTTTGTTGTTGGGTTGAGTGTGCAGATGGTACTACTACTTGAATAAAGTT
TGTATATTTTATAATCGAACTGGAACATATCGTGATGAATTCTATGTTGG
CAAAACTTGTGAGATGAT
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