FC923526

Overview
NameFC923526
Unique NameFC923526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ECO45 (Divalent-cation tolerance protein cutA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTT-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ECO24 (Divalent-cation tolerance protein cutA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ECO81 (Divalent-cation tolerance protein cutA OS=Escherichia coli O81 (strain ED1a) GN=cutA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.611e-18
Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + + E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTT-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQAMLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_DANRE (Protein CutA homolog OS=Danio rerio GN=cuta PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.633e-17
Identity = 39/101 (38.61%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  142 VVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTRD 444
            ++ V  P+++  + +   I++ +LAACVN  P   ++Y WKGEI+   E LL+++T+ SL++ L  ++ A H YD PE+I  PI  GSQ YL+W+  +  D
Sbjct:   49 LLLVNCPTEQTARDIGRIIMEKRLAACVNIFPRTATMYYWKGEIRDATEILLLVRTKTSLVQRLMTYITAIHPYDIPEIITFPINDGSQHYLKWIAEAVTD 149          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_CITK8 (Divalent-cation tolerance protein cutA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=cutA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALTY (Divalent-cation tolerance protein cutA OS=Salmonella typhimurium GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALTI (Divalent-cation tolerance protein cutA OS=Salmonella typhi GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALSV (Divalent-cation tolerance protein cutA OS=Salmonella schwarzengrund (strain CVM19633) GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALPK (Divalent-cation tolerance protein cutA OS=Salmonella paratyphi A (strain AKU_12601) GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALPA (Divalent-cation tolerance protein cutA OS=Salmonella paratyphi A GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
The following BLAST results are available for this feature:
BLAST of FC923526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_ECO453.290e-1840.00Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECO243.290e-1840.00Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECO815.611e-1839.09Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_DANRE1.633e-1738.61Protein CutA homolog OS=Danio rerio GN=cuta PE=2 S... [more]
CUTA_CITK88.103e-1738.24Divalent-cation tolerance protein cutA OS=Citrobac... [more]
CUTA_SALTY1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALTI1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALSV1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALPK1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALPA1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionC31706A09EF StrClemenN Citrus clementina cDNA clone C31706A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923526 ID=FC923526; Name=FC923526; organism=Citrus clementina; type=EST; length=618bp
GGTCCCACTCTCTCTTCTTCCCTCAAAACGGGTTCCGCTCCTTCTCTCCC
GTTCTTCGGATCAAAGTTTAGTAACCAAGCTCGCGCGAAGAGTAGTAACA
CGATCAAAATGGAAGGCAACAGCAACACTGTACCAAGTATTGTAGTTTAT
GTCACCGTTCCTAGCAAAGAAGCAGGAAAGAAACTGGCTGAAAGCATAGT
GAAAGCAAAACTTGCAGCATGTGTGAATCGAGTGCCAGGTATTGAATCTG
TTTACGAGTGGAAGGGAGAGATCCAGACAGATGCTGAAGAACTTCTTATT
ATAAAGACTAGGCAATCCCTTTTGGAAACTCTGACAGAGCATGTCAAGGC
AAATCATGAATATGATGCGCCAGAAGTAATTGCCTTGCCCATCACTGGTG
GCAGCCAGCCATACCTAGAGTGGCTAAAAAGCAGTACAAGGGACTGACTC
CCGCGGATGTAGTGTGATGTAGTGTGTGGACGCTGTAACTGATAAGCTCC
TTTTGTTGTTGGGTTGAGTGTGCAGATGGTACTACTACTTGAATAAAGTT
TGTATATTTTATAATCGAACTGGAACATATCGTGATGAATTCTATGTTGG
CAAAACTTGTGAGATGAT
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