FC923526

Overview
NameFC923526
Unique NameFC923526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALNS (Divalent-cation tolerance protein cutA OS=Salmonella newport (strain SL254) GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALHS (Divalent-cation tolerance protein cutA OS=Salmonella heidelberg (strain SL476) GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALG2 (Divalent-cation tolerance protein cutA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALEP (Divalent-cation tolerance protein cutA OS=Salmonella enteritidis PT4 (strain P125109) GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALDC (Divalent-cation tolerance protein cutA OS=Salmonella dublin (strain CT_02021853) GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALCH (Divalent-cation tolerance protein cutA OS=Salmonella choleraesuis GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SALA4 (Divalent-cation tolerance protein cutA OS=Salmonella agona (strain SL483) GN=cutA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_YERPY (Divalent-cation tolerance protein cutA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=cutA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSS 435
            +IVV  T P + + + LA  ++  KLAACV  +PG  S+Y W+G+++ + E  L+ K+     + L  ++K +H Y  PE++ LP+  G + YL WL +S
Sbjct:   18 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 117
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_YERPS (Divalent-cation tolerance protein cutA OS=Yersinia pseudotuberculosis GN=cutA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSS 435
            +IVV  T P + + + LA  ++  KLAACV  +PG  S+Y W+G+++ + E  L+ K+     + L  ++K +H Y  PE++ LP+  G + YL WL +S
Sbjct:   18 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 117
[Close]
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_YERPP (Divalent-cation tolerance protein cutA OS=Yersinia pestis (strain Pestoides F) GN=cutA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSS 435
            +IVV  T P + + + LA  ++  KLAACV  +PG  S+Y W+G+++ + E  L+ K+     + L  ++K +H Y  PE++ LP+  G + YL WL +S
Sbjct:   18 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 117
The following BLAST results are available for this feature:
BLAST of FC923526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_SALNS1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALHS1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALG21.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALEP1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALDC1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALCH1.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALA41.805e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_YERPY1.170e-1536.00Divalent-cation tolerance protein cutA OS=Yersinia... [more]
CUTA_YERPS1.170e-1536.00Divalent-cation tolerance protein cutA OS=Yersinia... [more]
CUTA_YERPP1.170e-1536.00Divalent-cation tolerance protein cutA OS=Yersinia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31706A09EF StrClemenN Citrus clementina cDNA clone C31706A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923526 ID=FC923526; Name=FC923526; organism=Citrus clementina; type=EST; length=618bp
GGTCCCACTCTCTCTTCTTCCCTCAAAACGGGTTCCGCTCCTTCTCTCCC
GTTCTTCGGATCAAAGTTTAGTAACCAAGCTCGCGCGAAGAGTAGTAACA
CGATCAAAATGGAAGGCAACAGCAACACTGTACCAAGTATTGTAGTTTAT
GTCACCGTTCCTAGCAAAGAAGCAGGAAAGAAACTGGCTGAAAGCATAGT
GAAAGCAAAACTTGCAGCATGTGTGAATCGAGTGCCAGGTATTGAATCTG
TTTACGAGTGGAAGGGAGAGATCCAGACAGATGCTGAAGAACTTCTTATT
ATAAAGACTAGGCAATCCCTTTTGGAAACTCTGACAGAGCATGTCAAGGC
AAATCATGAATATGATGCGCCAGAAGTAATTGCCTTGCCCATCACTGGTG
GCAGCCAGCCATACCTAGAGTGGCTAAAAAGCAGTACAAGGGACTGACTC
CCGCGGATGTAGTGTGATGTAGTGTGTGGACGCTGTAACTGATAAGCTCC
TTTTGTTGTTGGGTTGAGTGTGCAGATGGTACTACTACTTGAATAAAGTT
TGTATATTTTATAATCGAACTGGAACATATCGTGATGAATTCTATGTTGG
CAAAACTTGTGAGATGAT
back to top