FC923583

Overview
NameFC923583
Unique NameFC923583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923583 vs. ExPASy Swiss-Prot
Match: NIT2_HUMAN (Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 59/208 (28.37%), Postives = 94/208 (45.19%), Query Frame = 2
Query:   11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREVFFQRAKPYKDHPTILKMQELAKELGV-VIPVNFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDGPG---YQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVV 616
            ++ +Q   +   S N+  A   +R A  +GA I+ + E F   Y  +     +F          +  K+ E+AKE  + +I  +  EE     YN+ A+   DG+ L  YRK H+   D PG   +QE    +PGD+ F  F T + ++G+ IC+D  F E A+    +G ++L YP A              HW  + +  A  N V
Sbjct:    6 LALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAK-----YFPEYAEKIPGESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDS-FSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNL------TTGPAHWELLQRSRAVDNQV 201          
BLAST of FC923583 vs. ExPASy Swiss-Prot
Match: NIT1_MOUSE (Nitrilase homolog 1 OS=Mus musculus GN=Nit1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 64/237 (27.00%), Postives = 106/237 (44.73%), Query Frame = 2
Query:    8 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREVFFQRAKPYKDHPTILKMQELAKELGVVIPVNFFEEA------NNAHYNSIAIIDADGSDLGLYRKSHIPD------GPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEILRHSTERVNH 682
            +V+  Q   T +   N  T   LV+ A   GA +  + E F+  +  +   E          D   + +  +LA+E G+ + +  F E       N   YN   ++++ GS +  YRK+H+ D      GP  +E  Y  PG T     +T   K+G+AIC+D  FPE +  +   GAEIL Y +A GS      +    HW  +++  A  +   ++A+ + G    RH   R ++
Sbjct:   44 LVAVCQVTSTPNKQENFKTCAELVQEAARLGACLAFLPEAFD--FIARNPAETLLLSEPLNGD--LLGQYSQLARECGIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGP-MRESNYTKPGGTLEPPVKTPAGKVGLAICYDMRFPELSLKLAQAGAEILTYSSAFGS------VTGPAHWEVLLRARAIESQCYVIAAAQCG----RHHETRASY 265          
BLAST of FC923583 vs. ExPASy Swiss-Prot
Match: NIT2_BOVIN (Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 61/208 (29.33%), Postives = 97/208 (46.63%), Query Frame = 2
Query:   11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREVFFQRAKPYKDHPTILKMQELAKELGV-VIPVNFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDGPG---YQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVV 616
            ++ +Q   +   S NL  A  L+R A  +GA I+ + E F   Y  +     +F          +  K+ E+AKE  + VI  +  E+     YN+ A+   DG+ L  +RK H+   D PG   +QE    +PGD+ F +F T + ++G+ IC+D  F E A+    +G ++L YP A              HW  + +G A  N V
Sbjct:    6 LALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTK-----YFPDYAEKIPGDSTQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHLFDIDVPGKITFQESETLSPGDS-FSLFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFNL------TTGPAHWELLQRGRAVDNQV 201          
BLAST of FC923583 vs. ExPASy Swiss-Prot
Match: Y601_SYNY3 (UPF0012 hydrolase sll0601 OS=Synechocystis sp. (strain PCC 6803) GN=sll0601 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 66/231 (28.57%), Postives = 100/231 (43.29%), Query Frame = 2
Query:    8 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREVFFQRAKPYKDHPTILKMQELAKELGVVIPVNFFE-----EANNAHYNSIAIIDADGSDLGLYRKSH-----IPDGPGYQEKFYFNPGDTGFKVFQT-KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEILRHST 667
            + +ALQ     +++ NL  AE L+  A  +GA ++ + E F    F   + E   Q           L  Q +A+   V I    F      EA  A YN+  +I  +G +L  Y K H     +PDG  Y E      G     V+ +  F  +G++IC+D  FPE  R +  QGA++LF P A            +DHW+ ++Q  A  N   ++A  + G    R  T
Sbjct:    5 LAAALQMTSRPNLTENLQEAEELIDLAVRQGAELVGLPENFA---FLGNETEKLEQATAIATATEKFL--QTMAQRFQVTILAGGFPFPVAGEAGKA-YNTATLIAPNGQELARYHKVHLFDVNVPDGNTYWESATVMAGQKYPPVYHSDSFGNLGLSICYDVRFPELYRYLSRQGADVLFVPAAF------TAYTGKDHWQVLLQARAIENTCYVIAPAQTGCHYERRHT 223          
BLAST of FC923583 vs. ExPASy Swiss-Prot
Match: NIT1_RAT (Nitrilase homolog 1 OS=Rattus norvegicus GN=Nit1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 64/237 (27.00%), Postives = 106/237 (44.73%), Query Frame = 2
Query:    8 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREVFFQRAKPYKDHPTILKMQELAKELGVVIPVNFFEEANNAH------YNSIAIIDADGSDLGLYRKSHIPD------GPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEILRHSTERVNH 682
            +V+  Q   T +   N  T   LV+ A   GA +  + E F+   F           ++P  D   + +  +LA+E G+ + +  F E           YN   ++++ GS +  YRK+H+ D      GP  +E  Y  PG       +T   K+G+AIC+D  FPE +  +   GAEIL YP+A GS      +    HW  +++  A  +   ++A+ + G    RH   R ++
Sbjct:   13 LVAVCQVTSTPNKQENFKTCAELVQEATRLGACLAFLPEAFD---FIARNPAETLLLSEPL-DGDLLGQYSQLARECGIWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGP-MRESNYTMPGYALEPPVKTPAGKVGLAICYDMRFPELSLKLAQAGAEILTYPSAFGS------VTGPAHWEVLLRARAIESQCYVIAAAQCG----RHHETRASY 234          
BLAST of FC923583 vs. ExPASy Swiss-Prot
Match: NIT1_HUMAN (Nitrilase homolog 1 OS=Homo sapiens GN=NIT1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 65/236 (27.54%), Postives = 104/236 (44.07%), Query Frame = 2
Query:    8 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREVFFQRAKPYKDHPTILKMQELAKELGVVIPVNFFEEANNAH------YNSIAIIDADGSDLGLYRKSHIPDG--PGYQEKFYFN---PGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEILRHSTERVNH 682
            +V+  Q   T D   N  T   LVR A   GA +  + E F+   F           ++P      + +  +LA+E G+ + +  F E           YN   ++++ G+ +  YRK+H+ D   PG       N   PG +      T   KIG+A+C+D  FPE + A+   GAEIL YP+A GS      +    HW  +++  A      +VA+ + G    RH  +R ++
Sbjct:   48 LVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFD---FIARDPAETLHLSEPLGGK-LLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALAQAGAEILTYPSAFGS------ITGPAHWEVLLRARAIETQCYVVAAAQCG----RHHEKRASY 269          
BLAST of FC923583 vs. ExPASy Swiss-Prot
Match: BUP1_DICDI (Beta-ureidopropionase OS=Dictyostelium discoideum GN=pyd3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 54/202 (26.73%), Postives = 98/202 (48.51%), Query Frame = 2
Query:   59 ATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREVFFQRAKPYKDHPTILKMQELAKELGVVIPVNFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKE 649
            A  E+++ AA   G N++ +QE +   + FC  ++  + + A+      +I  +Q +A++  +VI ++   E ++ H    +N+  ++  +G+ +G  RK+HIP    + E  Y+     G  VF+T + KI + IC+ +       A  L GAEI+F P+A   E       S   W    +  A  N   + + NR+G E
Sbjct:  101 AKIEKMIDAAGAMGVNVLCLQETWHMPFAFCTREKYPWVEFAESASTGQSIKFIQRMARKYNMVI-ISPMLERDDVHASTIHNTAVVVGNNGNIIGKSRKNHIPRTGDFNESTYYMESTLGHPVFETIYGKIAINICYGRHHNLNWLAYGLNGAEIVFNPSATVGEL------SEPMWGVEARNAAMTNNYFVGSINRVGTE 295          
BLAST of FC923583 vs. ExPASy Swiss-Prot
Match: NIT2_PONAB (Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 62/208 (29.81%), Postives = 97/208 (46.63%), Query Frame = 2
Query:   11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREVFFQRAKPYKDHPTILKMQELAKELGV-VIPVNFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDGPG---YQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVV 616
            ++ +Q   +   S N+  A   +R A  +GA I+ + E F   Y      + F + A+      T  K+ E+AKE  + +I  +  EE     YN+ A+   DG+ L  YRK H+   D PG   +QE    +PGD+ F  F T + ++G+ IC+D  F E A+    +G ++L YP A              HW  + +G A  N V
Sbjct:    6 LALIQLQISSINSDNVTRACSFIREAATQGAKIVSLPECFNSPY----GTKYFPEYAEKIPGEST-QKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDS-FCTFDT-YCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNL------TTGPAHWELLQRGRAVDNQV 200          
BLAST of FC923583 vs. ExPASy Swiss-Prot
Match: YPQQ_PSEFL (UPF0012 hydrolase in pqqF 5'region OS=Pseudomonas fluorescens PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 48/164 (29.27%), Postives = 82/164 (50.00%), Query Frame = 2
Query:   41 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREVFFQRAKPYKDHPTILKMQELAKELGVVIPVNFFEEANNAH-YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 529
            DV+ NL    ++  A     A+++++ E+F   Y    +       A+   D P+  ++  +A+  G  I   + E + +   YN++ +IDA G  L  YRK+H+    G  +   F+ G+  F + +    K+G  IC+D  FPE AR + L GAE++  PTA
Sbjct:   35 DVAGNLQRLHQV--AMEATDADLLVLPEMFLSGYNIGLEAVGALAEAQ---DGPSAQRIAAIAQAAGTAILYGYPERSVDGQIYNAVQLIDAQGQRLCNYRKTHLF---GDLDHSMFSAGEDDFPLVELDGWKLGFLICYDIEFPENARRLALAGAELILVPTA 190          
The following BLAST results are available for this feature:
BLAST of FC923583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
NIT2_HUMAN1.962e-1328.37Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV... [more]
NIT1_MOUSE2.562e-1327.00Nitrilase homolog 1 OS=Mus musculus GN=Nit1 PE=2 S... [more]
NIT2_BOVIN4.370e-1329.33Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1[more]
Y601_SYNY35.707e-1328.57UPF0012 hydrolase sll0601 OS=Synechocystis sp. (st... [more]
NIT1_RAT5.707e-1327.00Nitrilase homolog 1 OS=Rattus norvegicus GN=Nit1 P... [more]
NIT1_HUMAN5.707e-1327.54Nitrilase homolog 1 OS=Homo sapiens GN=NIT1 PE=1 S... [more]
BUP1_DICDI1.661e-1226.73Beta-ureidopropionase OS=Dictyostelium discoideum ... [more]
NIT2_PONAB2.169e-1229.81Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV... [more]
YPQQ_PSEFL9.112e-1129.27UPF0012 hydrolase in pqqF 5'region OS=Pseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionC31706G06EF StrClemenN Citrus clementina cDNA clone C31706G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923583 ID=FC923583; Name=FC923583; organism=Citrus clementina; type=EST; length=735bp
GGAAGTGGTGGTGTCAGCTCTGCAATTCGCTTGCACCGACGATGTCTCTA
CTAATCTTGCCACCGCTGAAAGGCTGGTCAGAGCTGCTCATGGAAAAGGT
GCAAACATAATTCTTATTCAGGAACTCTTTGAGGGTTATTATTTCTGTCA
AGCACAAAGAGAGGTCTTCTTTCAGCGTGCTAAGCCATATAAGGACCATC
CCACAATTCTCAAGATGCAGGAGCTTGCGAAAGAGCTAGGTGTAGTGATA
CCAGTTAACTTCTTTGAAGAGGCCAATAATGCCCATTACAATTCAATAGC
GATCATTGATGCTGATGGATCTGATCTTGGACTCTACAGGAAGTCCCATA
TCCCAGATGGACCAGGCTATCAGGAAAAGTTCTACTTCAATCCAGGGGAC
ACTGGCTTCAAGGTTTTCCAAACTAAATTTGCAAAAATTGGAGTTGCAAT
ATGCTGGGATCAGTGGTTTCCAGAGGCAGCTCGGGCTATGGTTTTACAAG
GTGCTGAGATATTGTTTTACCCTACTGCTATTGGTTCTGAACCTCAAGAT
GATGGACTTGATTCTCGTGATCACTGGAGGCGAGTGATGCAAGGGCATGC
TGGGGCTAATGTAGTACCTCTAGTTGCTTCGAATCGCATTGGAAAAGAAA
TATTGAGACACAGCACGGAAAGAGTCAATCACATTCTACGGGAACTCCTT
TATTGCANGCCCAACGGGGAGATGTTGCTGCTGCT
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