FC923641

Overview
NameFC923641
Unique NameFC923641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_ASHGO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Ashbya gossypii GN=TRM61 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 79/222 (35.59%), Postives = 113/222 (50.90%), Query Frame = 2
Query:  110 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGF---------------PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD--GILCSFS 703
            I EGDLV+V+     +K +++     F  R+G+F H D +G+P+GS +      SN+ GF+++L PTPELWTL L HRTQI+Y  D S+++  L   P   V              AR V   G +++++FH  R   A  +F+  G+     VT+  RD+  +GF                D  S  AD IFLDLP PW AIP    ++ +D    LC FS
Sbjct:   11 IAEGDLVLVWISRGNVKQLRIKSGEVFNTRYGSFAHDDIVGRPYGSQIGVRTKGSNRFGFIHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLGCSPQSRVIEAGTGSGSFSHAFARTV---GQLFSYEFHHMRYEQALAEFQEHGLIADGNVTITHRDVCQKGFLIKAGDTTSYEFLEGQDSVSVNADCIFLDLPAPWEAIPHLDAVIAKDRTARLCCFS 229          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_YARLI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Yarrowia lipolytica GN=TRM61 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.275e-28
Identity = 74/204 (36.27%), Postives = 116/204 (56.86%), Query Frame = 2
Query:  110 IKEGDLVIVYERHDCMKAVKVCQNSA-FQNRFGAFKHS--DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFS 703
            I++GDLV+ +     +K + V +    F  R+GAF H   D  G   GSM   +K GF++L+ PTPELWTL L HRTQI+Y  D S+++  L++ PG  V              +R+    G VY+++FHE+R   A+++FER  +++ +    RD+   GF  E   + A ++FLDLP PW AIP  ++++ +  +  +C FS
Sbjct:    9 IEDGDLVLGWMTRTAIKPIVVEKKEGLFNTRYGAFPHRNMDKYGAQLGSM---SKQGFIHLIHPTPELWTLSLPHRTQIVYTTDSSYIVQRLKIRPGSTVIESGTGSGSFTHAISRSAGLAGKVYSYEFHEERYNLAKQEFERHQLTNVIPTH-RDVCNDGFDIENIDVNATAVFLDLPAPWTAIPHLERVIDRSVVSRVCCFS 208          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_CANGA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida glabrata GN=TRM61 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 78/221 (35.29%), Postives = 111/221 (50.23%), Query Frame = 2
Query:  110 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV-----FSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGF---------------PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFS 703
            I+EGDL +++   D +K V +  N  F  R+G+F H D IGKP+GS +      + K  FV+++ P+PELWTL L HRTQI+Y  D S+++  L   P   V              AR+V   G +Y+++FH  R   A E+F+  G+    T+   RD+   GF                ++    AD IFLDLP PW AIP    ++  D    LC FS
Sbjct:   12 IQEGDLALIWISRDNIKPVTINANETFNTRYGSFPHKDMIGKPYGSQIAIRTKVAKKFAFVHVMQPSPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPNSRVIEAGTGSGSFSHAFARSV---GQLYSYEFHPVRYEQATEEFKEHGLLDKNTIITHRDVCKDGFTIKKTDETSYQFKADEEQLQIKADVIFLDLPAPWEAIPHIDSVIDNDEKVGLCCFS 229          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_SCHPO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Schizosaccharomyces pombe GN=cpd1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.996e-28
Identity = 73/205 (35.61%), Postives = 104/205 (50.73%), Query Frame = 2
Query:  110 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN-KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFS 703
            ++ GDL + +   + +  + +     F N++GAF HS+ IGK +G  + S  K GF+YLL PTPELWTL L HRTQI+Y  DI+ +   L +  G  V              +R V P G ++TF++H  R  +A ++F        V     +  RD+   GF D      D+IFLDLP PW AIP     +  D    +C FS
Sbjct:   10 VENGDLAVAWIGRNKLIPLHIEAEKTFHNQYGAFPHSEMIGKRYGEQIASTAKQGFIYLLQPTPELWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGGNTHLTHRDVCKDGFLDT-EVKVDAIFLDLPAPWEAIPHLSNHVNHDKSTRICCFS 213          

HSP 2 Score: 21.557 bits (44), Expect = 1.996e-28
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  697 FLTCIEQVQRSCES 738
            F  CIEQ+Q S E+
Sbjct:  212 FSPCIEQIQHSAEA 225          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_ASPFU (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Aspergillus fumigatus GN=trm61 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 76/248 (30.65%), Postives = 108/248 (43.55%), Query Frame = 2
Query:  119 GDLVIVYERHD----CMKAVKVCQNSAFQN------RFGAFKHSDWIGKPFGSMVF----------------------------SNK--------------GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAV-------APT------GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEFSG---LADSIFLDLPQPWLAI 652
            GDL +++ R D     +  ++  +N  ++       RFG+F HS  I +P+GS +                             SNK               GF++LL PTPELWT  L HRTQ++Y  D S+++  L + PG  +               RAV       AP       G V +F+FH QRA   RE+    G+ + V V  RD+   GF   D  +G    A++IFLDLP PWLA+
Sbjct:   15 GDLALLHLRRDQTIPTILKLEDDENQGYKEGKVTNTRFGSFPHSTLIDQPWGSQIVASVVDTGSRGRKNQSSKKRKADDLDTPTSNKDEAQSSPGTPRAAASGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLCVRPGSTIIEAGAGSGSFTHASVRAVFNGYPSEAPAAKKRRLGKVCSFEFHAQRAQRIREEIHDHGLDALVEVTHRDVYEDGFLLGDPKTGKSPKANAIFLDLPAPWLAL 262          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_ASPOR (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Aspergillus oryzae GN=trm61 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 66/208 (31.73%), Postives = 89/208 (42.79%), Query Frame = 2
Query:  197 RFGAFKHSDWIGKPFGSMVFSNK--------------------------------------GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAV--------APT-----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEFSG---LADSIFLDLPQPWLAI 652
            RFG+F H     +P+GS + ++K                                       GF++LL PTPELWT  L HRTQ++Y  D S+++  L   PG  V               RAV         PT     G V +F+FH QRA   R +  + G+   V V  RD+   GF   D  +G    A++IFLDLP PWLA+
Sbjct:   51 RFGSFPHITLCDQPWGSQIIASKVDTGSRGRTQKMKRKADELDSSTQAEDKPSPQTPVAASSGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLRARPGSTVIEAGAGSGSFTHASVRAVFNGYPSDDQPTKKRRLGKVCSFEFHAQRAEKVRVEVNQHGLDGLVEVTHRDVYEDGFLLGDPKTGKSPKANAIFLDLPAPWLAL 258          
The following BLAST results are available for this feature:
BLAST of FC923641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRM61_ASHGO5.725e-2935.59tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_YARLI1.275e-2836.27tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CANGA1.666e-2835.29tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_SCHPO1.996e-2835.61tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASPFU2.041e-1830.65tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASPOR1.013e-1731.73tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionC31707D05EF StrClemenN Citrus clementina cDNA clone C31707D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923641 ID=FC923641; Name=FC923641; organism=Citrus clementina; type=EST; length=738bp
GGCTCTCTCTCTCTCTCTCCCTCTCAGATTTTGCTGTCTGACTTCCTGAA
CCCGTCACAATATGATGTTGCCAACTGATCCAACGAAAAAGATATCCTTT
ACTCGATGCATTAAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGA
CTGCATGAAAGCTGTTAAAGTATGCCAGAACTCAGCTTTCCAGAACCGTT
TTGGTGCGTTTAAACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATG
GTGTTCAGTAACAAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGA
GTTATGGACTCTGGTTTTGAGCCACAGAACTCAGATACTTTACATTGCAG
ATATTAGCTTTGTCATCATGTACTTAGAACTTGTTCCTGGTTGTTTGGTT
CTGGAGTCAGGGACTGGAAGTGGATCTTTGACAACCTCTCTTGCAAGGGC
TGTAGCTCCTACAGGACATGTCTATACTTTTGATTTTCATGAGCAAAGGG
CTGCCTCAGCTAGGGAAGACTTTGAGAGGACAGGAGTGAGCAGCTTTGTT
ACTGTGGGTGTTAGAGATATCCAGGGTCAGGGATTTCCTGATGAATTTAG
TGGGTTAGCTGATTCTATATTTCTGGACCTACCTCAGCCCTGGCTGGCAA
TTCCATCAGCAAAGAAAATGTTGAAACAAGACGGGATTCTGTGTTCTTTC
TCACATGTATTGAGCAAGTGCAGCGCTCATGTGAATCT
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