FC923648

Overview
NameFC923648
Unique NameFC923648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.977e-13
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            P+ +D R+  +VT ++ QG CGSCWAFS +AA E       N+ + L+EQELVDC   S  GC+G  +    E+I +  GV  E+ Y Y + + +C
Sbjct:  109 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCA--SQHGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSC 201          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 45/143 (31.47%), Postives = 73/143 (51.05%), Query Frame = 1
Query:  307 LNKFADMTNHEFASTYAGSKIKHHRMF--QGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH*SNQGCNGGLMELAFEFIKK-KGGVTTEAKYPYXSYDGTC 726
            +N+F+ +   EF + Y GSK      +  +G R           S+P   DWR K  V  V++Q  CG CWAFS ++A+E    I    L  LS Q+++DC   +N GC GG    A  ++ + +  +  +++YP+ + +G C
Sbjct:   60 VNQFSYLFPEEFKALYLGSKYAWAPRYPAEGQRPIPN------VSLPLRFDWRDKHVVNPVRNQEMCGGCWAFSVVSAIESARAIQGKSLDYLSVQQVIDCSF-NNSGCLGGSPLCALRWLNETQLKLVADSQYPFKAVNGQC 195          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 49/169 (28.99%), Postives = 77/169 (45.56%), Query Frame = 1
Query:  211 SLDEKHKRFNVFKQNVMHVHQTNKMDK-PYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVT--SIPSSVDWRKKGS-VTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPY 705
            S +E   R ++F  N+    +  + D    +  +  F+D+T  EF   Y      + R   G    G  +  +    S+P S DWRK  S ++ +KDQ  C  CWA +    +E +  I     V +S QEL+DC      GC+GG +  AF  +    G+ +E  YP+
Sbjct:   55 SPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLYG-----YRRAAGGVPSMGREIRSEEPEESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGR-CGDGCHGGFVWDAFITVLNNSGLASEKDYPF 217          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CYSP3_CARCN (Cysteine proteinase 3 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIM 558
            P S+DWRKKG+VT VK+QG CGSCWAFSTIA VEGIN I+
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIATVEGINKIV 41          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CYSP4_CARCN (Cysteine proteinase 4 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMT 561
            P S+DWRKKG+VT VK+QG CGSCWAFSTI  VEGIN I T
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIVTVEGINKIRT 42          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CYSP2_CARCN (Cysteine proteinase 2 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMT 561
            P SVDWR+KG+VT VKDQ  CGSCWAFST+A VEGIN I+T
Sbjct:    2 PGSVDWRQKGAVTPVKDQNPCGSCWAFSTVATVEGINKIVT 42          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATC_CANFA (Dipeptidyl-peptidase 1 (Fragment) OS=Canis familiaris GN=CTSC PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 49/168 (29.17%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  241 VFKQNVMHVHQTNKMDKPYKL-KLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRK-KGS--VTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVS--LSEQELVDCXH*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            ++K N   V   N + K +   +  ++  +T  +  +   G KI   +    T      ++ +++ +P+S DWR  +G+  V+ V++Q  CGSC+AF++ A +E    I+TN   +  LS QE+V C   + QGC GG   L      +  G+  EA +PY   D  C
Sbjct:  142 LYKYNYEFVKAINTIQKSWTATRYIEYETLTLRDMMTRVGGRKIPRPKPTPLTAE----IHEEISRLPTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTAMLEARIRILTNNTQTPILSPQEIVSCSQYA-QGCEGGFPYLIAGKYAQDFGLVEEACFPYAGSDSPC 304          
The following BLAST results are available for this feature:
BLAST of FC923648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PEPT1_DERPT1.977e-1340.63Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]
CATO_MOUSE2.582e-1331.47Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
CATW_HUMAN4.404e-1328.99Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CYSP3_CARCN2.185e-1277.50Cysteine proteinase 3 (Fragment) OS=Carica candama... [more]
CYSP4_CARCN2.854e-1275.61Cysteine proteinase 4 (Fragment) OS=Carica candama... [more]
CYSP2_CARCN2.854e-1275.61Cysteine proteinase 2 (Fragment) OS=Carica candama... [more]
CATC_CANFA9.182e-1129.17Dipeptidyl-peptidase 1 (Fragment) OS=Canis familia... [more]

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Properties
Property NameValue
Genbank descriptionC31707E01EF StrClemenN Citrus clementina cDNA clone C31707E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923648 ID=FC923648; Name=FC923648; organism=Citrus clementina; type=EST; length=735bp
GATCTTGAGTTGAATCATACTCGTAAGTACCACTTGAAAAAGAAAAAAAA
AGGTTAAAAAATGAAGAGGGTTTATTTATTAGCTGCCTTTTTGCTAGCTT
TGGTTCTGGGAATCGTTGAGGGTTTCGATTTCCATGAGAAGGAGTTGGAA
TCCGAGGAAGGTCTGTGGGATTTATACGAGAGGTGGAGGAGTCATCATAC
GGTTTCAAGGAGTCTTGATGAGAAGCATAAGCGCTTCAATGTGTTCAAGC
AAAATGTTATGCATGTTCACCAAACTAACAAGATGGACAAGCCTTACAAG
TTGAAGCTGAACAAGTTTGCGGACATGACAAATCATGAATTTGCAAGCAC
ATACGCTGGATCAAAGATTAAGCATCACAGGATGTTCCAAGGGACGCGTG
GAAACGGGACCTTCATGTATGGGAAGGTAACGAGTATCCCATCATCAGTC
GATTGGAGGAAGAAAGGGTCTGTCACCGCTGTCAAGGATCAAGGCCAATG
CGGTAGCTGCTGGGCTTTTTCAACAATTGCAGCAGTAGAGGGCATTAATC
ACATTATGACAAATAAGCTCGTTTCTTTGTCTGAGCAAGAGTTAGTTGAT
TGTGNACACTGATCAAACCAAGGATGTAATGGAGGGCTAATGGAATTGGC
ATTTGAGTTCATCAAGAAAAAGGGTGGCGTAACAACAGAGGCTAAGTACC
CTTACCNAAGCTATGATGGAACATGTGACGTTTCA
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