FC923648

Overview
NameFC923648
Unique NameFC923648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH-*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYD 717
            P SVDWR+KG VT VKDQGQCGSCWAFST  A+EG +     KLVSLSEQ LVDC     NQGCNGGLM+ AF++++  GG+ +E  YPY + D
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSRPEGNQGCNGGLMDQAFQYVQDNGGIDSEESYPYTAKD 95          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 73/195 (37.44%), Postives = 104/195 (53.33%), Query Frame = 1
Query:  166 WDLYERW-------RSHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH-*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            W+L+++        ++   V R + EK+ +F V   N+ H    +     Y L +N   DMT+ E  S  +  ++ +       + N T+       +P SVDWR+KG VT VK QG CG+CWAFS + A+E    + T KLVSLS Q LVDC     N+GCNGG M  AF++I    G+ +EA YPY + D  C
Sbjct:   28 WNLWKKTYGKQYKEKNEEAVRRLIWEKNLKF-VMLHNLEHSMGMHS----YDLGMNHLGDMTSEEVMSLMSSLRVPNQ-----WQRNITYKSNPNQMLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSEKYGNKGCNGGFMTEAFQYIIDNKGIDSEASYPYKATDQKC 212          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 73/196 (37.24%), Postives = 100/196 (51.02%), Query Frame = 1
Query:  166 WDLYERWRS-------HHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDC--XH*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            W+L+++  S            R + EK+ +F V   N+ H    +     Y L +N   DMT  E  S     ++         + N T+       +P SVDWR+KG VT VK QG CG+CWAFS + A+E    + T KLVSLS Q LVDC      N+GCNGG M  AF++I    G+ +EA YPY + +G C
Sbjct:   28 WNLWKKTYSKQYKEENEEVARRLIWEKNLKF-VMLHNLEHSMGMHS----YDLGMNHLGDMTGEEVISLMGSLRVPSQ-----WQRNVTYRSNSNQKLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNNGIDSEASYPYKAMNGKC 213          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.103e-27
Identity = 59/99 (59.60%), Postives = 71/99 (71.72%), Query Frame = 1
Query:  436 IPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH-*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTCD 729
            +P SVDW KKG VT VK+QGQCGSCWAFS   A+EG     T KLVSLSEQ LVD      NQGCNGGLM+ AF++IK+ GG+ +E  YPY + D +C+
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRPQGNQGCNGGLMDNAFQYIKENGGLDSEESYPYEATDTSCN 99          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 71/171 (41.52%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  220 EKHKRFNVFKQNVMHVHQTNKMDKPYKLK-LNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGK-VTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            E   RFN+FK N++         +   +  +  ++D+T  EFA T+  +      +   +R N     GK V +IP + DWR+KG+VT VK+QG CGSCWAFST   VE      T KL+SLSEQ+LVDC    + GCNGGL   A+E I K GG+  E  YPY + +  C
Sbjct:   35 EDEIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHLTASW----VVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCDG-LDDGCNGGLPSNAYESIIKMGGLMLEDNYPYDAKNEKC 200          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27
Identity = 63/179 (35.20%), Postives = 98/179 (54.75%), Query Frame = 1
Query:  211 SLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSI-------PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            S  EK +RF +F+ N+  +   N  D   + ++NKFAD++  E  S Y G  +             T  + +V  +       P   DWR+   VT+VK+QG CG+CWAF+T+ ++E    I  N+ ++LSEQ+L+DC    + GC+GGL+  AFE +   GG+  E+ YPY + +G C
Sbjct:   41 SESEKLRRFQIFRHNLEEIINKNHNDSTAQYEINKFADLSKDETISKYTGLSLPLQ----------TQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDCDF-VDAGCDGGLLHTAFEAVMNMGGIQAESDYPYEANNGDC 208          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27
Identity = 66/176 (37.50%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  220 EKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSI-------PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            EK +RF +F+ N+  +   N+ D   K ++NKF+D++  E  + Y G  +             T  + KV  +       P   DWR+   VT+VK+QG CG+CWAF+T+A++E    I  N+L++LSEQ+++DC    + GCNGGL+  AFE I K GGV  E+ YPY + +  C
Sbjct:   44 EKLRRFKIFQHNLNEIINKNQNDSA-KYEINKFSDLSKDETIAKYTGLSLPIQ----------TQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCDF-VDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNNC 207          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.140e-27
Identity = 67/192 (34.90%), Postives = 105/192 (54.69%), Query Frame = 1
Query:  175 YERWRSHHTVSRSLDEKHKRFNVFKQN--VMHVHQTNKMD--KPYKLKLNKFADMTNHEFASTYAG---SKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH*S-NQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            +  WR+ H  + +++E+  +  V+++N  ++ +H    ++    + + +N F D+TN EF     G    KIK   +FQ  +    F+Y     +P  VDWR+ G VT VK+QG C S WAFS   ++EG     T +L+ LSEQ L+DC   +   GC+GG M+ AF+++K  GG+ TE  YPY      C
Sbjct:   29 WNEWRTKHGKTYNMNEERLKRAVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQ----FLY-----VPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDCMGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRGQGREC 211          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.140e-27
Identity = 67/190 (35.26%), Postives = 106/190 (55.79%), Query Frame = 1
Query:  169 DLYERWRSHHTVSRSLD-EKHKRFNVFKQNVMHVHQTN--KMDKPYKL-KLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCXH*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            D +E +  ++  + + D EK+KR+++FK N+  ++  N    D P    K+NKF+D++  E  + + G  I               +       P   DWR++  VT++K+QG CG+CWAF+T+A+VE    +  N+L+ LSEQ+L+DC    + GCNGGL+  AFE I + GGV TE  YP+   +  C
Sbjct:   54 DYFESFVENYNKNYTSDWEKNKRYSIFKDNLHEINAKNGNATDGPTATYKINKFSDLSKSELIAKFTGLSIPER---VSNFCKTIILNQPPDKGPLHFDWREQNKVTSIKNQGACGACWAFATLASVESQFAMRHNRLIDLSEQQLIDCDS-VDMGCNGGLLHTAFEEIMRMGGVQTELDYPFVGRNRRC 239          
BLAST of FC923648 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.140e-27
Identity = 71/214 (33.18%), Postives = 114/214 (53.27%), Query Frame = 1
Query:  112 IVEGFDFHEKELESEEGLWDLYERWRSHHT-VSRSLDEKHKRFN--VFKQNVMHVHQTNKMDKP----YKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFM-YGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDC-XH*SNQGCNGGLMELAFEFIKKKGGVTTEAKYPYXSYDGTC 726
            +V+ F    ++   +  +  L   W+ + T + +  D+K   F   +F+ N +   + NK  +     Y   LN  AD+T+ EF     G ++ +    +G R    F  Y K   +P  VDWR KG+VT V++QG+CGSC+AF+T AA+E  +  MT +L+ LS Q +VDC  +  N GC+GG M  AF++  +  G+  E++YPY   +  C
Sbjct:   67 VVQEFLKKTEDNGEQRAMEKLETEWKDYVTALGKHYDQKENNFRMAIFESNELMTERINKKYEQGLVSYTTALNDLADLTDEEFM-VRNGLRLPNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLGNNGCSGGYMPTAFQYASRY-GIAMESRYPYVGTEQRC 278          
The following BLAST results are available for this feature:
BLAST of FC923648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
CATL1_CHICK2.405e-2761.70Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATS_SAIBB3.141e-2737.44Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATS_CANFA3.141e-2737.24Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATL1_SHEEP4.103e-2759.60Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CATL_SCHMA5.358e-2741.52Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATV_NPVCF6.998e-2735.20Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATV_NPVAC6.998e-2737.50Viral cathepsin OS=Autographa californica nuclear ... [more]
TEST2_RAT9.140e-2734.90Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATV_NPVLD9.140e-2735.26Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATL_BRUPA9.140e-2733.18Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31707E01EF StrClemenN Citrus clementina cDNA clone C31707E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923648 ID=FC923648; Name=FC923648; organism=Citrus clementina; type=EST; length=735bp
GATCTTGAGTTGAATCATACTCGTAAGTACCACTTGAAAAAGAAAAAAAA
AGGTTAAAAAATGAAGAGGGTTTATTTATTAGCTGCCTTTTTGCTAGCTT
TGGTTCTGGGAATCGTTGAGGGTTTCGATTTCCATGAGAAGGAGTTGGAA
TCCGAGGAAGGTCTGTGGGATTTATACGAGAGGTGGAGGAGTCATCATAC
GGTTTCAAGGAGTCTTGATGAGAAGCATAAGCGCTTCAATGTGTTCAAGC
AAAATGTTATGCATGTTCACCAAACTAACAAGATGGACAAGCCTTACAAG
TTGAAGCTGAACAAGTTTGCGGACATGACAAATCATGAATTTGCAAGCAC
ATACGCTGGATCAAAGATTAAGCATCACAGGATGTTCCAAGGGACGCGTG
GAAACGGGACCTTCATGTATGGGAAGGTAACGAGTATCCCATCATCAGTC
GATTGGAGGAAGAAAGGGTCTGTCACCGCTGTCAAGGATCAAGGCCAATG
CGGTAGCTGCTGGGCTTTTTCAACAATTGCAGCAGTAGAGGGCATTAATC
ACATTATGACAAATAAGCTCGTTTCTTTGTCTGAGCAAGAGTTAGTTGAT
TGTGNACACTGATCAAACCAAGGATGTAATGGAGGGCTAATGGAATTGGC
ATTTGAGTTCATCAAGAAAAAGGGTGGCGTAACAACAGAGGCTAAGTACC
CTTACCNAAGCTATGATGGAACATGTGACGTTTCA
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