FC923660

Overview
NameFC923660
Unique NameFC923660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_FUSNN (Phosphoenolpyruvate carboxykinase [ATP] OS=Fusobacterium nucleatum subsp. nucleatum GN=pckA PE=3 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.089e-51
Identity = 106/229 (46.29%), Postives = 139/229 (60.70%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGK-DGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A  +LF+H + IR T EE       DFTI +A  F C      + S  +I +N  ++  +I  T+Y+GE+KK +FS+M+Y+MP   IL +H   NM     + A               D NR LIGDDEH W D G+ N EGGCYAKCI+L  E EP+I+ AIKFG+++ENVV D  TR++ Y D S+T NTR  YPI+YIPNA++  VG  PK VI L  D+FGVLP
Sbjct:  122 ASQNLFIHQLLIR-TDEEYNENNDIDFTIISAPNFHCVPEIDGVNSEAAIIINFEKKIAIICATKYSGEIKKSVFSIMNYIMPHENILPMHCSANMDPVTHETAIFFGLSGTGKTTLSADPNRKLIGDDEHGWCDKGIFNFEGGCYAKCINLKEESEPEIYRAIKFGSLVENVVVDPITRKIQYEDASITPNTRVGYPIDYIPNAELSGVGGIPKVVIFLTADSFGVLP 349          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_DINSH (Phosphoenolpyruvate carboxykinase [ATP] OS=Dinoroseobacter shibae (strain DFL 12) GN=pckA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.089e-51
Identity = 108/240 (45.00%), Postives = 146/240 (60.83%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCN--MGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+H LF+ +M  RP   EL++F T DFTI N   F  +   H   S T I LN  R+ ++I GT+YAGE KK +F++++Y++P++ I+ +H   N  +G   D A               D  R LIGDDEH W + G  N EGGCYAK I+LS E EP+I+   + FG V+EN+VFD  T ++D+ D S+T N R AYP+ YI NA    +G HPKN+I+L CDAFGVLP  +  T AQ
Sbjct:  130 AWHGLFIRHMLRRPERGELDSF-TADFTIINCPSFKADPAKHDCRSDTVIALNFDRKLILIGGTEYAGENKKSVFTLLNYMLPEKGIMPMHCSANHAVGNPVDTAVFFGLSGTGKTTLSADPERVLIGDDEHGWSERGTFNFEGGCYAKTINLSAEAEPEIYATTEMFGTVIENMVFDPETLDLDFEDDSLTANMRCAYPLNYISNASETALGGHPKNIIMLTCDAFGVLPPISRLTPAQ 368          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_NOVAD (Phosphoenolpyruvate carboxykinase [ATP] OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=pckA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.168e-51
Identity = 103/229 (44.98%), Postives = 140/229 (61.14%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H+LF+  + +RPT +EL +F  P++TI +   F  +   H   S T I +N   + ++I GT YAGEMKK +F +++YL+P + ++ +H   N+G DG  A               D +R LIGDDEH W D  V N EGGCYAK I LS E EP+I+   K FG VLENVV D  TR +D  D S+ EN+R +YPI++IPNA    +GP P N+I L  DA+GVLP
Sbjct:  130 AWHNLFIRTLLVRPTTDELASF-VPEYTIIDLPSFRADPARHGSRSETVIAVNFTEKLILIGGTAYAGEMKKSVFGILNYLLPVKGVMPMHCSANVGPDGKTAVFFGLSGTGKTTLSADASRTLIGDDEHGWSDTAVFNFEGGCYAKMIRLSAEAEPEIFATTKRFGTVLENVVIDPVTRTIDLDDNSLAENSRGSYPIDFIPNASEENLGPVPANLIFLTADAYGVLP 357          

HSP 2 Score: 22.3274 bits (46), Expect = 1.168e-51
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  705 PWHNMYHFISGY 740
            P   MYHF+SGY
Sbjct:  364 PDQAMYHFLSGY 375          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_PSEAE (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas aeruginosa GN=pckA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.422e-51
Identity = 103/228 (45.18%), Postives = 139/228 (60.96%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+ +LF    C+   PE+    G  ++ + N   F C        S   + LN A+++++I G +YAGEMKK +FSV ++L+P+R +L +H   N+G+ GDV                D +RYLIGDDEH WG+  V N+EGGCYAKCIDLS + EP IW AIKFGAVLENVV DE  R  +Y+D S+T+N+RAAYP+E++       +G  P  VI L CD  GVLP
Sbjct:  116 AWQNLF--GRCLFIEPEQYNPAGKDEWQVLNVANFECVPERDGTNSDGCVILNFAQKKVLIAGMRYAGEMKKAMFSVQNFLLPERDVLPMHCAANIGEAGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNVEGGCYAKCIDLSEKNEPVIWKAIKFGAVLENVVLDEE-RVPNYADDSLTQNSRAAYPLEHVEKRSEKNLGGEPNAVIFLTCDLTGVLP 340          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_PSEAB (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pckA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.422e-51
Identity = 103/228 (45.18%), Postives = 139/228 (60.96%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+ +LF    C+   PE+    G  ++ + N   F C        S   + LN A+++++I G +YAGEMKK +FSV ++L+P+R +L +H   N+G+ GDV                D +RYLIGDDEH WG+  V N+EGGCYAKCIDLS + EP IW AIKFGAVLENVV DE  R  +Y+D S+T+N+RAAYP+E++       +G  P  VI L CD  GVLP
Sbjct:  116 AWQNLF--GRCLFIEPEQYNPAGKDEWQVLNVANFECVPERDGTNSDGCVILNFAQKKVLIAGMRYAGEMKKAMFSVQNFLLPERDVLPMHCAANIGEAGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNVEGGCYAKCIDLSEKNEPVIWKAIKFGAVLENVVLDEE-RVPNYADDSLTQNSRAAYPLEHVEKRSEKNLGGEPNAVIFLTCDLTGVLP 340          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_PSEA8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas aeruginosa (strain LESB58) GN=pckA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.422e-51
Identity = 103/228 (45.18%), Postives = 139/228 (60.96%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+ +LF    C+   PE+    G  ++ + N   F C        S   + LN A+++++I G +YAGEMKK +FSV ++L+P+R +L +H   N+G+ GDV                D +RYLIGDDEH WG+  V N+EGGCYAKCIDLS + EP IW AIKFGAVLENVV DE  R  +Y+D S+T+N+RAAYP+E++       +G  P  VI L CD  GVLP
Sbjct:  116 AWQNLF--GRCLFIEPEQYNPAGKDEWQVLNVANFECVPERDGTNSDGCVILNFAQKKVLIAGMRYAGEMKKAMFSVQNFLLPERDVLPMHCAANIGEAGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNVEGGCYAKCIDLSEKNEPVIWKAIKFGAVLENVVLDEE-RVPNYADDSLTQNSRAAYPLEHVEKRSEKNLGGEPNAVIFLTCDLTGVLP 340          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_PARDP (Phosphoenolpyruvate carboxykinase [ATP] OS=Paracoccus denitrificans (strain Pd 1222) GN=pckA PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.425e-51
Identity = 106/240 (44.17%), Postives = 145/240 (60.42%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCN--MGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIW-NAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+H LF+ N+  RP   EL  F  P+FTI N   F  +   H   S T I LN  ++ ++I  T YAGE KK +F++++Y++P++ ++ +H   N  +G   D A               D +R LIGDDEH W DNG+ N EGGCYAK I+LS E EP+I+    KFG V+EN+V+D  T E+D+ D S+T+N R AYP+E I NA    +G  P+NVI+L CDA+GVLP  A  T AQ
Sbjct:  130 AWHGLFIRNLLRRPEASELAGF-LPEFTIINCPSFKADPARHGCRSETVIALNFDKKLILIGNTAYAGENKKSVFTLLNYILPEKGVMPMHCSANHALGNPNDSAIFFGLSGTGKTTLSADPSRTLIGDDEHGWSDNGIFNFEGGCYAKTINLSAEAEPEIYATCFKFGTVIENMVYDPDTLELDFEDNSLTDNMRCAYPLEQISNASETSLGGQPRNVIMLTCDAYGVLPPIARLTPAQ 368          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHESH (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella sediminis (strain HAW-EB3) GN=pckA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.167e-51
Identity = 104/228 (45.61%), Postives = 137/228 (60.09%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H LF  N+ I   PE+      P + I NA  F C        S  ++ +N A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+G  GD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IWNAI+FG VLENV  DE+ R  DY+D ++TEN+RAAYP+E+I   K   +G  P  V+ L CD  GVLP
Sbjct:  116 AWHQLFARNLFI--VPEQFNAADKPIWQIMNAPGFECIPERDGTHSDATVIINFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAKGVLPMHCSANVGIKGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWNAIRFGTVLENVTMDEN-RVPDYTDSTLTENSRAAYPLEHIELRKEENLGAEPHAVVFLTCDVSGVLP 340          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SINMW (Phosphoenolpyruvate carboxykinase [ATP] OS=Sinorhizobium medicae (strain WSM419) GN=pckA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.372e-51
Identity = 109/238 (45.80%), Postives = 141/238 (59.24%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIW-NAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+HSLF+ N+ IRP  E L +F  P  TI +   F  +   H   S T I  +L    ++I GT YAGEMKK +F+V++YL+P++ ++ +H   N+G  GD A               D NR LIGDDEH WG+ GV N EGGCYAK I LS   EP+I+    +FG V+ENVV DE  R  D+ D S+TENTR AYP+ +IPNA      P P+ +I+L  DAFGVLP  A  T  Q
Sbjct:  131 AWHSLFIRNLLIRPEREALSSF-QPMLTIIDLPSFKASPERHGCRSETVIACDLTNGLVLIGGTSYAGEMKKSVFTVLNYLLPRKSVMPMHCSANVGPAGDTAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGEKGVFNFEGGCYAKAIRLSEAAEPEIFATTQRFGTVMENVVLDER-RMPDFEDGSLTENTRCAYPLHFIPNASKTGTAPQPRTIIMLTADAFGVLPPIAKLTPEQ 366          

HSP 2 Score: 22.7126 bits (47), Expect = 3.372e-51
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  705 PWHNMYHFISGY 740
            P   MYHF+SGY
Sbjct:  364 PEQAMYHFLSGY 375          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SILST (Phosphoenolpyruvate carboxykinase [ATP] OS=Silicibacter sp. (strain TM1040) GN=pckA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.136e-51
Identity = 107/240 (44.58%), Postives = 145/240 (60.42%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDG--DVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+H+LF+ ++  RP  E+L++F   DFTI N   F  +   H   S T I LN  R+ ++I GT+YAGE KK +F++++YL+P++ I+ +H   N  K    D A               D +R LIGDDEH W  NG  N EGGCYAK I+L+ E EP+I+    KFG V+EN+ FD  T ++++ D S+T N R AYP+ YI NA     G HPKN+I+L CDAFGVLP  A  T AQ
Sbjct:  130 AWHNLFIRHLLRRPDREDLDDF-IADFTIINCPSFQADPNKHNCRSETVIALNFDRKMILIGGTEYAGENKKSVFTLLNYLLPEKGIMPMHCSANHAKGNPVDTAVFFGLSGTGKTTLSADPDRVLIGDDEHGWASNGTFNFEGGCYAKTINLNPEAEPEIYATTEKFGTVIENMTFDPETFDLNFDDDSLTANMRCAYPLHYISNASASARGGHPKNIIMLTCDAFGVLPPIARLTPAQ 368          
The following BLAST results are available for this feature:
BLAST of FC923660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_FUSNN1.089e-5146.29Phosphoenolpyruvate carboxykinase [ATP] OS=Fusobac... [more]
PCKA_DINSH1.089e-5145.00Phosphoenolpyruvate carboxykinase [ATP] OS=Dinoros... [more]
PCKA_NOVAD1.168e-5144.98Phosphoenolpyruvate carboxykinase [ATP] OS=Novosph... [more]
PCKA_PSEAE1.422e-5145.18Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_PSEAB1.422e-5145.18Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_PSEA81.422e-5145.18Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_PARDP2.425e-5144.17Phosphoenolpyruvate carboxykinase [ATP] OS=Paracoc... [more]
PCKA_SHESH3.167e-5145.61Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_SINMW3.372e-5145.80Phosphoenolpyruvate carboxykinase [ATP] OS=Sinorhi... [more]
PCKA_SILST4.136e-5144.58Phosphoenolpyruvate carboxykinase [ATP] OS=Silicib... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31707F01EF StrClemenN Citrus clementina cDNA clone C31707F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923660 ID=FC923660; Name=FC923660; organism=Citrus clementina; type=EST; length=742bp
AAGGGCTTACCATTCTTTGTTCATGCACAACATGTGTATCCGACCCACTC
CTGAAGAGCTGGAGAATTTCGGTACTCCGGACTTCACTATATGCAATGCT
GGACAGTTCCCGTGTAATCGTTATACTCACTACATGACATCCTCCACTAG
CATAGACCTTAATCTTGCTAGGAGGGAAATGGTCATCCTCGGCACACAGT
ACGCCGGGGAAATGAAGAAGGGTCTTTTCAGTGTTATGCATTATCTCATG
CCTAAACGTCAAATCCTCTCCCTTCATTCTGGCTGCAATATGGGAAAAGA
TGGAGATGTTGCCCTCTTCTTTGGATTGTCAGGTACTGGAAAGACAACAC
TGTCTACTGATCACAATCGATATCTGATTGGAGACGATGAACACTGTTGG
GGTGACAATGGTGTGTCAAACATTGAGGGTGGTTGCTATGCCAAGTGCAT
TGATCTCTCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTG
GCGCTGTGTTGGAAAATGTTGTGTTTGATGAGCATACCAGAGAGGTGGAT
TATTCTGACAAATCTGTCACAGAGAACACTCGTGCTGCCTACCCCATTGA
GTATATCCCCAATGCAAAGATACCATGCGTTGGTCCTCATCCCAAGAATG
TCATCCTTTTGGCATGTGATGCTTTTGGTGTACTCCCACAGTGAGCAAGC
TGAACCCTGGCACAACATGTACCATTTCATCAGTGGCTACAC
back to top