FC923660

Overview
NameFC923660
Unique NameFC923660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHISS (Phosphoenolpyruvate carboxykinase [ATP] OS=Shigella sonnei (strain Ss046) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLP 369
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHIFL (Phosphoenolpyruvate carboxykinase [ATP] OS=Shigella flexneri GN=pckA PE=3 SV=4)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLP 369
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHIF8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Shigella flexneri serotype 5b (strain 8401) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLP 369
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHIDS (Phosphoenolpyruvate carboxykinase [ATP] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQRLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLP 369
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHIBS (Phosphoenolpyruvate carboxykinase [ATP] OS=Shigella boydii serotype 4 (strain Sb227) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLP 369
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHIB3 (Phosphoenolpyruvate carboxykinase [ATP] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLP 369
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_ECOSE (Phosphoenolpyruvate carboxykinase [ATP] OS=Escherichia coli (strain SE11) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLP 369
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_ECOLU (Phosphoenolpyruvate carboxykinase [ATP] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIENIVKPVSKAGHATKVIFLTADAFGVLP 369
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_ECOLI (Phosphoenolpyruvate carboxykinase [ATP] OS=Escherichia coli (strain K12) GN=pckA PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLP 369
[Close]
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_ECOLC (Phosphoenolpyruvate carboxykinase [ATP] OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=pckA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 106/230 (46.09%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+  A+LENV   E    +D+ D S TENTR +YPI +I N   P     H   VI L  DAFGVLP
Sbjct:  142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLP 369
The following BLAST results are available for this feature:
BLAST of FC923660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_SHISS1.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Shigell... [more]
PCKA_SHIFL1.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Shigell... [more]
PCKA_SHIF81.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Shigell... [more]
PCKA_SHIDS1.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Shigell... [more]
PCKA_SHIBS1.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Shigell... [more]
PCKA_SHIB31.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Shigell... [more]
PCKA_ECOSE1.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Escheri... [more]
PCKA_ECOLU1.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Escheri... [more]
PCKA_ECOLI1.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Escheri... [more]
PCKA_ECOLC1.377e-4646.09Phosphoenolpyruvate carboxykinase [ATP] OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC31707F01EF StrClemenN Citrus clementina cDNA clone C31707F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923660 ID=FC923660; Name=FC923660; organism=Citrus clementina; type=EST; length=742bp
AAGGGCTTACCATTCTTTGTTCATGCACAACATGTGTATCCGACCCACTC
CTGAAGAGCTGGAGAATTTCGGTACTCCGGACTTCACTATATGCAATGCT
GGACAGTTCCCGTGTAATCGTTATACTCACTACATGACATCCTCCACTAG
CATAGACCTTAATCTTGCTAGGAGGGAAATGGTCATCCTCGGCACACAGT
ACGCCGGGGAAATGAAGAAGGGTCTTTTCAGTGTTATGCATTATCTCATG
CCTAAACGTCAAATCCTCTCCCTTCATTCTGGCTGCAATATGGGAAAAGA
TGGAGATGTTGCCCTCTTCTTTGGATTGTCAGGTACTGGAAAGACAACAC
TGTCTACTGATCACAATCGATATCTGATTGGAGACGATGAACACTGTTGG
GGTGACAATGGTGTGTCAAACATTGAGGGTGGTTGCTATGCCAAGTGCAT
TGATCTCTCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTG
GCGCTGTGTTGGAAAATGTTGTGTTTGATGAGCATACCAGAGAGGTGGAT
TATTCTGACAAATCTGTCACAGAGAACACTCGTGCTGCCTACCCCATTGA
GTATATCCCCAATGCAAAGATACCATGCGTTGGTCCTCATCCCAAGAATG
TCATCCTTTTGGCATGTGATGCTTTTGGTGTACTCCCACAGTGAGCAAGC
TGAACCCTGGCACAACATGTACCATTTCATCAGTGGCTACAC
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