FC923660

Overview
NameFC923660
Unique NameFC923660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_WIGBR (Phosphoenolpyruvate carboxykinase [ATP] OS=Wigglesworthia glossinidia brevipalpis GN=pckA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.597e-45
Identity = 102/230 (44.35%), Postives = 136/230 (59.13%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYT-HYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F  NM I P  +EL  F   DFT+ +  +    ++  H + S   I +NL    ++I GT Y GE+KKGLFSVM+Y++P + I S+H   N G   DVA               D  RYLIGDDEH W  +GV N EGGCYAK I+LS EKEP+I+NAIK  A+LENV+  + +  +++ D + TEN+R +YPI +I N   P     HPKN+I L  DAFGV P
Sbjct:  141 AWQAHFFKNMFIEPIEQELNKF-LQDFTVFSVPKAINKKWKDHKLNSENFIAINLTENTLLIGGTWYGGEIKKGLFSVMNYILPLKNIASMHCSANEGFKKDVALFFGLSGTGKTTLSTDSKRYLIGDDEHGWCKDGVFNFEGGCYAKTINLSEEKEPEIFNAIKKNAILENVMVLKDS-NINFFDGTKTENSRVSYPINHIKNIVKPISQSGHPKNIIFLTADAFGVFP 368          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SALTY (Phosphoenolpyruvate carboxykinase [ATP] OS=Salmonella typhimurium GN=pckA PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.556e-45
Identity = 107/230 (46.52%), Postives = 134/230 (58.26%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRPT EEL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FSVM+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I++AI+  A+LENV   E    VD+ D S TENTR +YPI +I N   P     H   VI L  D FGVLP
Sbjct:  141 AWQAHFVKNMFIRPTDEELVGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSVMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYHAIRRDALLENVTVRE-DGTVDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTAD-FGVLP 367          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_EDWI9 (Phosphoenolpyruvate carboxykinase [ATP] OS=Edwardsiella ictaluri (strain 93-146) GN=pckA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.897e-44
Identity = 104/230 (45.22%), Postives = 130/230 (56.52%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRY-THYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRP  +EL  F  PDF + N  +    ++    + S   +  NL  R  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS + EPDI+ AI   A+LENV        VD+ D S TENTR +YPI +I N   P       K VI L  DAFGVLP
Sbjct:  141 AWQAHFVKNMFIRPEADELAGF-EPDFIVMNGAKCTNPQWQAQGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSIMNYLLPLKGIASMHCSANVGEQGDVAIFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSADAEPDIYGAITRDALLENVTV-RADGSVDFDDGSKTENTRVSYPIYHIKNIVKPVSKAGAAKKVIFLTADAFGVLP 368          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_BAUCH (Phosphoenolpyruvate carboxykinase [ATP] OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=pckA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.475e-40
Identity = 99/239 (41.42%), Postives = 134/239 (56.07%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+ + F+ NM I+P   +L +F  P+F + N  +     +    M S   I LNL     +I GT Y GEMKKGLF+VM+Y +P + I S+H   N+G + DVA               D NR LIGDDEH W ++G+ N+EGGCYAK I+L  E EP+I+ AI+  A+LENV+       V+Y D S T+N R +YP+ +I N   P     H   +I L  DAFGVLP  A+ T  Q
Sbjct:  140 AWQAHFVKNMFIQPDAIDLISF-EPEFIVLNGAKCTNPNWREQNMHSENFIALNLTEGMQLIAGTWYGGEMKKGLFTVMNYHLPLKGIASMHCSANVGINKDVALFFGLSGTGKTTLSHDTNRALIGDDEHGWDNDGIFNLEGGCYAKTINLKPELEPEIFQAIRCNALLENVMV-RADGSVNYHDNSKTDNARVSYPLNHIKNRVQPVSCASHASTIIFLTADAFGVLPPVATLTNEQ 376          
The following BLAST results are available for this feature:
BLAST of FC923660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_WIGBR2.597e-4544.35Phosphoenolpyruvate carboxykinase [ATP] OS=Wiggles... [more]
PCKA_SALTY7.556e-4546.52Phosphoenolpyruvate carboxykinase [ATP] OS=Salmone... [more]
PCKA_EDWI94.897e-4445.22Phosphoenolpyruvate carboxykinase [ATP] OS=Edwards... [more]
PCKA_BAUCH1.475e-4041.42Phosphoenolpyruvate carboxykinase [ATP] OS=Baumann... [more]

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Properties
Property NameValue
Genbank descriptionC31707F01EF StrClemenN Citrus clementina cDNA clone C31707F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923660 ID=FC923660; Name=FC923660; organism=Citrus clementina; type=EST; length=742bp
AAGGGCTTACCATTCTTTGTTCATGCACAACATGTGTATCCGACCCACTC
CTGAAGAGCTGGAGAATTTCGGTACTCCGGACTTCACTATATGCAATGCT
GGACAGTTCCCGTGTAATCGTTATACTCACTACATGACATCCTCCACTAG
CATAGACCTTAATCTTGCTAGGAGGGAAATGGTCATCCTCGGCACACAGT
ACGCCGGGGAAATGAAGAAGGGTCTTTTCAGTGTTATGCATTATCTCATG
CCTAAACGTCAAATCCTCTCCCTTCATTCTGGCTGCAATATGGGAAAAGA
TGGAGATGTTGCCCTCTTCTTTGGATTGTCAGGTACTGGAAAGACAACAC
TGTCTACTGATCACAATCGATATCTGATTGGAGACGATGAACACTGTTGG
GGTGACAATGGTGTGTCAAACATTGAGGGTGGTTGCTATGCCAAGTGCAT
TGATCTCTCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTG
GCGCTGTGTTGGAAAATGTTGTGTTTGATGAGCATACCAGAGAGGTGGAT
TATTCTGACAAATCTGTCACAGAGAACACTCGTGCTGCCTACCCCATTGA
GTATATCCCCAATGCAAAGATACCATGCGTTGGTCCTCATCCCAAGAATG
TCATCCTTTTGGCATGTGATGCTTTTGGTGTACTCCCACAGTGAGCAAGC
TGAACCCTGGCACAACATGTACCATTTCATCAGTGGCTACAC
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