FC923660

Overview
NameFC923660
Unique NameFC923660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_LEPIC (Phosphoenolpyruvate carboxykinase [ATP] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=pckA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.921e-56
Identity = 116/230 (50.43%), Postives = 147/230 (63.91%), Query Frame = 2
Query:    2 RAYHSLFMHNMCIRPTPEELENFGTPDFTICNA-GQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            +A+   F  NM +RPT EEL     P+FTI NA G    N   H M S   +  +LA++  +I GT+Y GEMKKG+FSVM+Y +P + ILS+H   N+G+DGD A               D NR LIGDDEH W DNG+ NIEGGCYAK I+L  + EPDI+ AI+  A+LENVV+D  T+ VDYS  + TENTR +YPI +I N ++P  G HPK +I L  DAFGVLP
Sbjct:  127 KAWQHHFCTNMFLRPTKEELVGLD-PEFTIINACGIKNENFKQHGMNSEVFVIFHLAKKICIIGGTEYGGEMKKGIFSVMNYKLPLQGILSMHCSANVGQDGDTALFFGLSGTGKTTLSTDPNRKLIGDDEHGWDDNGIFNIEGGCYAKVINLDPKTEPDIYEAIRKDALLENVVYDPQTKIVDYSSAAKTENTRVSYPIFHINNIQVPSKGGHPKTIIFLTYDAFGVLP 355          

HSP 2 Score: 21.9422 bits (45), Expect = 4.921e-56
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  717 MYHFISGY 740
            MYHF+SGY
Sbjct:  366 MYHFLSGY 373          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_RHOPT (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris (strain TIE-1) GN=pckA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 8.362e-56
Identity = 114/238 (47.90%), Postives = 150/238 (63.03%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNA-IKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+HSLF+  +  RP   ELENF  P+ T+ +   F  +   H   S   + ++ AR+ ++I GTQYAGEMKK +F+ ++Y +P++ +L +H   N+G +GD A               D NR LIGDDEH WG +GV N EGGCYAKCI LS E EP+I+ A  +FGAVLENVV  E  R+ D+ D S TENTR+AYP+E IPNA +      PKNV++LA DAFGV+P  A  T AQ
Sbjct:  131 AWHSLFIRTLLRRPERAELENF-VPELTLIDLPSFRADPKRHGCRSENVVAIDFARKIVLIGGTQYAGEMKKSVFTTLNYYLPEKGVLPMHCSANVGPNGDTAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGKDGVFNFEGGCYAKCIKLSAENEPEIYAASTRFGAVLENVVLGEIDRKPDFDDGSKTENTRSAYPLESIPNASLTGRAGQPKNVVMLAADAFGVMPPIAKLTPAQ 367          

HSP 2 Score: 22.7126 bits (47), Expect = 8.362e-56
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  705 PWHNMYHFISGY 740
            P   MYHF+SGY
Sbjct:  365 PAQAMYHFLSGY 376          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_RHOPA (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris GN=pckA PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 8.362e-56
Identity = 114/238 (47.90%), Postives = 150/238 (63.03%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNA-IKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+HSLF+  +  RP   ELENF  P+ T+ +   F  +   H   S   + ++ AR+ ++I GTQYAGEMKK +F+ ++Y +P++ +L +H   N+G +GD A               D NR LIGDDEH WG +GV N EGGCYAKCI LS E EP+I+ A  +FGAVLENVV  E  R+ D+ D S TENTR+AYP+E IPNA +      PKNV++LA DAFGV+P  A  T AQ
Sbjct:  131 AWHSLFIRTLLRRPERAELENF-VPELTLIDLPSFRADPKRHGCRSENVVAIDFARKIVLIGGTQYAGEMKKSVFTTLNYYLPEKGVLPMHCSANVGPNGDTAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGKDGVFNFEGGCYAKCIKLSSENEPEIYAASTRFGAVLENVVLGELDRKPDFDDGSKTENTRSAYPLESIPNASLTGRAGQPKNVVMLAADAFGVMPPIAKLTPAQ 367          

HSP 2 Score: 22.7126 bits (47), Expect = 8.362e-56
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  705 PWHNMYHFISGY 740
            P   MYHF+SGY
Sbjct:  365 PAQAMYHFLSGY 376          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_STAHJ (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pckA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.514e-56
Identity = 113/237 (47.68%), Postives = 148/237 (62.45%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+H+LF  NM IRP  +E  +   P+FTI +A  F  +       S T + ++   + ++I GT+YAGEMKKG+FSVM+YL+P + I+S+H   N+G  GDVA                 +R LIGDDEH W  NG+ NIEGGCYAK I+LS+EKEP I+NAI++G +LEN V +E    VD+ D S TENTRAAYPI +I N  +P    HP  +I L  DAFGVLP  A  T +Q
Sbjct:  130 AWHNLFAQNMFIRPDSKEEASNIKPNFTIVSAPHFKADPEVDGTKSETFVIISFKHKTILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGDKGDVALFFGLSGTGKTTLSAAPDRKLIGDDEHGWNKNGIFNIEGGCYAKAINLSKEKEPQIYNAIQYGTILENTVVNER-GVVDFDDNSYTENTRAAYPIHHIDNIVLPSKAAHPNTIIFLTADAFGVLPPIAKLTKSQ 365          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_STAAW (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain MW2) GN=pckA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.623e-55
Identity = 111/228 (48.68%), Postives = 144/228 (63.16%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H+LF  NM IRP  +E      P+FTI +A  F  +       S T + ++   + ++I GT+YAGEMKKG+FSVM+YL+P + I+S+H   N+G+ GDVA               D +R LIGDDEH W  NGV NIEGGCYAK I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+P
Sbjct:  130 AWHNLFAKNMFIRPESKEEATKIKPNFTIVSAPHFKADPEVDGTKSETFVIISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGTGKTTLSADPHRKLIGDDEHGWNKNGVFNIEGGCYAKAINLSKEKEPQIFDAIKYGAILENTVVAE-DGSVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIP 356          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_STAAU (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus GN=pckA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.623e-55
Identity = 111/228 (48.68%), Postives = 144/228 (63.16%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H+LF  NM IRP  +E      P+FTI +A  F  +       S T + ++   + ++I GT+YAGEMKKG+FSVM+YL+P + I+S+H   N+G+ GDVA               D +R LIGDDEH W  NGV NIEGGCYAK I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+P
Sbjct:  130 AWHNLFAKNMFIRPESKEEATKIKPNFTIVSAPHFKADPEVDGTKSETFVIISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGTGKTTLSADPHRKLIGDDEHGWNKNGVFNIEGGCYAKAINLSKEKEPQIFDAIKYGAILENTVVAE-DGSVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIP 356          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_STAAT (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=pckA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.623e-55
Identity = 111/228 (48.68%), Postives = 144/228 (63.16%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H+LF  NM IRP  +E      P+FTI +A  F  +       S T + ++   + ++I GT+YAGEMKKG+FSVM+YL+P + I+S+H   N+G+ GDVA               D +R LIGDDEH W  NGV NIEGGCYAK I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+P
Sbjct:  130 AWHNLFAKNMFIRPESKEEATKIKPNFTIVSAPHFKADPEVDGTKSETFVIISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGTGKTTLSADPHRKLIGDDEHGWNKNGVFNIEGGCYAKAINLSKEKEPQIFDAIKYGAILENTVVAE-DGSVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIP 356          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_STAAS (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain MSSA476) GN=pckA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.623e-55
Identity = 111/228 (48.68%), Postives = 144/228 (63.16%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H+LF  NM IRP  +E      P+FTI +A  F  +       S T + ++   + ++I GT+YAGEMKKG+FSVM+YL+P + I+S+H   N+G+ GDVA               D +R LIGDDEH W  NGV NIEGGCYAK I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+P
Sbjct:  130 AWHNLFAKNMFIRPESKEEATKIKPNFTIVSAPHFKADPEVDGTKSETFVIISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGTGKTTLSADPHRKLIGDDEHGWNKNGVFNIEGGCYAKAINLSKEKEPQIFDAIKYGAILENTVVAE-DGSVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIP 356          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_STAAR (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain MRSA252) GN=pckA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.623e-55
Identity = 111/228 (48.68%), Postives = 144/228 (63.16%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H+LF  NM IRP  +E      P+FTI +A  F  +       S T + ++   + ++I GT+YAGEMKKG+FSVM+YL+P + I+S+H   N+G+ GDVA               D +R LIGDDEH W  NGV NIEGGCYAK I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+P
Sbjct:  130 AWHNLFAKNMFIRPESKEEATKIKPNFTIVSAPHFKADPEVDGTKSETFVIISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGTGKTTLSADPHRKLIGDDEHGWNKNGVFNIEGGCYAKAINLSKEKEPQIFDAIKYGAILENTVVAE-DGSVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIP 356          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_STAAN (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain N315) GN=pckA PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.623e-55
Identity = 111/228 (48.68%), Postives = 144/228 (63.16%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H+LF  NM IRP  +E      P+FTI +A  F  +       S T + ++   + ++I GT+YAGEMKKG+FSVM+YL+P + I+S+H   N+G+ GDVA               D +R LIGDDEH W  NGV NIEGGCYAK I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+P
Sbjct:  130 AWHNLFAKNMFIRPESKEEATKIKPNFTIVSAPHFKADPEVDGTKSETFVIISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGTGKTTLSADPHRKLIGDDEHGWNKNGVFNIEGGCYAKAINLSKEKEPQIFDAIKYGAILENTVVAE-DGSVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIP 356          
The following BLAST results are available for this feature:
BLAST of FC923660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_LEPIC4.921e-5650.43Phosphoenolpyruvate carboxykinase [ATP] OS=Leptosp... [more]
PCKA_RHOPT8.362e-5647.90Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_RHOPA8.362e-5647.90Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_STAHJ9.514e-5647.68Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAW1.623e-5548.68Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAU1.623e-5548.68Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAT1.623e-5548.68Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAS1.623e-5548.68Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAR1.623e-5548.68Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAN1.623e-5548.68Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionC31707F01EF StrClemenN Citrus clementina cDNA clone C31707F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923660 ID=FC923660; Name=FC923660; organism=Citrus clementina; type=EST; length=742bp
AAGGGCTTACCATTCTTTGTTCATGCACAACATGTGTATCCGACCCACTC
CTGAAGAGCTGGAGAATTTCGGTACTCCGGACTTCACTATATGCAATGCT
GGACAGTTCCCGTGTAATCGTTATACTCACTACATGACATCCTCCACTAG
CATAGACCTTAATCTTGCTAGGAGGGAAATGGTCATCCTCGGCACACAGT
ACGCCGGGGAAATGAAGAAGGGTCTTTTCAGTGTTATGCATTATCTCATG
CCTAAACGTCAAATCCTCTCCCTTCATTCTGGCTGCAATATGGGAAAAGA
TGGAGATGTTGCCCTCTTCTTTGGATTGTCAGGTACTGGAAAGACAACAC
TGTCTACTGATCACAATCGATATCTGATTGGAGACGATGAACACTGTTGG
GGTGACAATGGTGTGTCAAACATTGAGGGTGGTTGCTATGCCAAGTGCAT
TGATCTCTCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTG
GCGCTGTGTTGGAAAATGTTGTGTTTGATGAGCATACCAGAGAGGTGGAT
TATTCTGACAAATCTGTCACAGAGAACACTCGTGCTGCCTACCCCATTGA
GTATATCCCCAATGCAAAGATACCATGCGTTGGTCCTCATCCCAAGAATG
TCATCCTTTTGGCATGTGATGCTTTTGGTGTACTCCCACAGTGAGCAAGC
TGAACCCTGGCACAACATGTACCATTTCATCAGTGGCTACAC
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