FC923660

Overview
NameFC923660
Unique NameFC923660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_LEPBP (Phosphoenolpyruvate carboxykinase [ATP] OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=pckA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.586e-54
Identity = 110/230 (47.83%), Postives = 145/230 (63.04%), Query Frame = 2
Query:    2 RAYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYT-HYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            RA+   F  NM +RPT EEL     P+FTI NA  +   +Y  H + S   +  +LA++  +I GT+Y GEMKKG+FSVM+Y +P + +L++H   N+GKDGD A               D NR LIGDDEH W DNG+ NIEGGCYAK I+L  + EP+I+ AI+  A+LENVV+D  T++VDYS  + TENTR +YPI +I N +      HP  VI L  DA+GVLP
Sbjct:  127 RAWQHHFCTNMFLRPTKEELAKLD-PEFTIINASGYKNPKYKEHGLNSEVFVIFHLAKKICIIGGTEYGGEMKKGIFSVMNYYLPLKNVLTMHCSANVGKDGDSALFFGLSGTGKTTLSTDPNRKLIGDDEHGWDDNGIFNIEGGCYAKTINLDPKTEPEIYAAIRRDALLENVVYDATTKKVDYSSAAKTENTRVSYPIFHIDNIQPGSKAGHPNTVIFLTYDAYGVLP 355          

HSP 2 Score: 21.9422 bits (45), Expect = 7.586e-54
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  717 MYHFISGY 740
            MYHF+SGY
Sbjct:  366 MYHFLSGY 373          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_LEPBA (Phosphoenolpyruvate carboxykinase [ATP] OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=pckA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.586e-54
Identity = 110/230 (47.83%), Postives = 145/230 (63.04%), Query Frame = 2
Query:    2 RAYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYT-HYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            RA+   F  NM +RPT EEL     P+FTI NA  +   +Y  H + S   +  +LA++  +I GT+Y GEMKKG+FSVM+Y +P + +L++H   N+GKDGD A               D NR LIGDDEH W DNG+ NIEGGCYAK I+L  + EP+I+ AI+  A+LENVV+D  T++VDYS  + TENTR +YPI +I N +      HP  VI L  DA+GVLP
Sbjct:  127 RAWQHHFCTNMFLRPTKEELAKLD-PEFTIINASGYKNPKYKEHGLNSEVFVIFHLAKKICIIGGTEYGGEMKKGIFSVMNYYLPLKNVLTMHCSANVGKDGDSALFFGLSGTGKTTLSTDPNRKLIGDDEHGWDDNGIFNIEGGCYAKTINLDPKTEPEIYAAIRRDALLENVVYDATTKKVDYSSAAKTENTRVSYPIFHIDNIQPGSKAGHPNTVIFLTYDAYGVLP 355          

HSP 2 Score: 21.9422 bits (45), Expect = 7.586e-54
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  717 MYHFISGY 740
            MYHF+SGY
Sbjct:  366 MYHFLSGY 373          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_RHOPS (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris (strain BisB5) GN=pckA PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 9.888e-54
Identity = 113/238 (47.48%), Postives = 148/238 (62.18%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNA-IKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+HSLF+  +  RP   +L  F  P+ T+ +   F  +   H   S   + ++ AR+ ++I GTQYAGEMKK +F+ ++Y +P+R +L +H   N+G  GD A               D NR LIGDDEH WG +GV N EGGCYAKCI LS E EP+I+ A  +FGAVLENVV DE TR+ D+ + S TENTR+AYP+E IPNA        PKNV++LA DAFGV+P  A  T AQ
Sbjct:  131 AWHSLFIRTLLRRPDRADLAAF-VPELTLIDLPSFRADPKRHGCRSENVVAIDFARKIVLIGGTQYAGEMKKSVFTTLNYYLPERGVLPMHCSANVGPAGDTAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGKDGVFNFEGGCYAKCIKLSPEAEPEIFAASSRFGAVLENVVLDEITRKPDFDNGSKTENTRSAYPLESIPNASPTGRAGQPKNVVMLAADAFGVMPPIAKLTPAQ 367          

HSP 2 Score: 22.7126 bits (47), Expect = 9.888e-54
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  705 PWHNMYHFISGY 740
            P   MYHF+SGY
Sbjct:  365 PAQAMYHFLSGY 376          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_BACTN (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacteroides thetaiotaomicron GN=pckA PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.163e-53
Identity = 115/231 (49.78%), Postives = 140/231 (60.61%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDG-DVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRPT EEL NFG PDF I NA +     Y    + S T++  NL  +  VIL T Y GEMKKG+FS M+YL+P   + S+H   N  K+G   A               D  R LIGDDEH W D GV N EGGCYAK I+L +E EPDIWNAIK  A+LEN   +    E++++DKSVTENTR +YPI +I N   P   GPH K VI L+ DAFGVLP
Sbjct:  135 AWQAHFVTNMFIRPTAEELANFGEPDFVIMNASKAKVENYKELGLNSETAVVFNLTEKIQVILNTWYGGEMKKGMFSYMNYLLPLNGMASMHCSANTDKEGKSSAIFFGLSGTGKTTLSTDPKRLLIGDDEHGWDDEGVFNFEGGCYAKVINLDKESEPDIWNAIKRDALLENCTVNAE-GEINFADKSVTENTRVSYPIYHIENIVKPVSKGPHAKQVIFLSADAFGVLP 364          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SILPO (Phosphoenolpyruvate carboxykinase [ATP] OS=Silicibacter pomeroyi GN=pckA PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.519e-53
Identity = 107/240 (44.58%), Postives = 148/240 (61.67%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCN--MGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIW-NAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPQ*AS*TLAQ 715
            A+H+LF+ ++  RP  E+L  F   DFT+ N   F  +   H   S T I +N  R+ ++I GT+YAGE KK +F++++Y++P++ ++ +H   N  +G   D A               D  R LIGDDEH W D G  N EGGCYAK I+L+ E EP+I+    KF  V+EN+VFDE T+E+D+ D S+T N R AYP+EYI NA +  +G HPKN+I+L CDAFGVLP  A  T AQ
Sbjct:  130 AWHNLFIRHLLRRPAREDLNEF-VADFTVINCPSFQADPAKHGCRSETVIAMNFDRKLILIGGTEYAGENKKSVFTLLNYMLPEKGVMPMHCSANHAVGNPVDTAVFFGLSGTGKTTLSADPARVLIGDDEHGWSDRGTFNFEGGCYAKTINLNPEAEPEIYATTTKFATVIENMVFDEETKELDFDDDSLTANMRCAYPLEYISNASVSALGGHPKNIIMLTCDAFGVLPPIARLTPAQ 368          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHEHH (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella halifaxensis (strain HAW-EB4) GN=pckA PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.519e-53
Identity = 107/228 (46.93%), Postives = 139/228 (60.96%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H LF  N+ I   PEE      P + I NA  F C        S  ++ +N A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+G DGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+AI+FG VLENVV DE+ R  DYS+ ++TENTRAAYP+E+I   K+   G  P  V+ L CD  GVLP
Sbjct:  116 AWHQLFARNLFI--VPEEFNAADKPVWQIMNAPDFECVPERDGTHSDATVIINFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAKGVLPMHCSANVGNDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTVLENVVTDEN-RVPDYSNSTLTENTRAAYPLEHIAQRKLDNCGAEPHAVVFLTCDVSGVLP 340          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_NITSB (Phosphoenolpyruvate carboxykinase [ATP] OS=Nitratiruptor sp. (strain SB155-2) GN=pckA PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.519e-53
Identity = 117/229 (51.09%), Postives = 141/229 (61.57%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYT-HYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM IRPT EEL+NF  PDFT+  A     +RY  H + S   I  N+     +I GT Y GE+KKG+FS+M+Y +P    LS+H   N+G   DVA               D NR LIGDDEH W DNGV N EGGCYAK I L  EKEPDI+ AIK  A+LENVV  E+  EVD+ D S TENTR +YPI +I   K    GPHPKN+I L+ DAFGVLP
Sbjct:  125 AWQAHFVKNMFIRPTEEELQNFH-PDFTLYVAANLKNDRYKEHGLNSDVFIIFNIEENIAIIGGTWYGGEIKKGIFSMMNYWLPLEGKLSMHCSANIGDKDDVALFFGLSGTGKTTLSADPNRRLIGDDEHGWDDNGVFNFEGGCYAKVIGLDPEKEPDIYAAIKRDALLENVVVKEN-GEVDFEDSSKTENTRVSYPIYHICKHKEDLQGPHPKNIIFLSADAFGVLP 351          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHEPW (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=pckA PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.984e-53
Identity = 108/228 (47.37%), Postives = 139/228 (60.96%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H LF  N+ I PT  E      P + I NA  F CN       S  ++ LN A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+G DGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+AI+FG VLENVV DE+ R  DY++ ++TENTRAAYP+E+I   K    G  P  V+ L CD  GVLP
Sbjct:  116 AWHQLFARNLFIVPT--EFNAADKPTWQIINAPGFVCNPERDGTHSDATVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAKGVLPMHCSANVGSDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTVLENVVTDEN-RVPDYTNSTLTENTRAAYPLEHIAQRKEENCGAEPHAVVFLTCDVSGVLP 340          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_SHEPA (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=pckA PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.384e-53
Identity = 107/228 (46.93%), Postives = 139/228 (60.96%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLP 688
            A+H LF  N+ I   PEE      P + I NA  F C        S  ++ +N A R++++ G +YAGEMKK +FSV ++L+P + +L +H   N+G DGD                 D  R+LIGDDEH W   GV NIEGGCYAKCIDLS++ EP IW+AI+FG VLENVV DE+ R  DY++ S+TENTRAAYP+E+I   K+   G  P  V+ L CD  GVLP
Sbjct:  116 AWHQLFARNLFI--VPEEFNAADKPVWQIINAPGFECVPERDGTHSDATVIINFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAKGVLPMHCSANVGADGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTVLENVVTDEN-RVPDYTNSSLTENTRAAYPLEHIAQRKLDNCGAEPHAVVFLTCDVSGVLP 340          
BLAST of FC923660 vs. ExPASy Swiss-Prot
Match: PCKA_EUBE2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=pckA PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.384e-53
Identity = 113/231 (48.92%), Postives = 144/231 (62.34%), Query Frame = 2
Query:    5 AYHSLFMHNMCIRPTPEELENFGTPDFTICNAGQFPCNRYTHY-MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGD-VAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLP 688
            A+ + F+ NM I+PT EELENF  PDF + NA +     Y    + S T +  N+   E VI+ T Y GEMKKG+FS+M+Y +P + I S+H   N  K+G+  A               D  R LIGDDEH W DNGV N EGGCYAK I+L ++ EPDI+NAIK  A+LENV  DE+ + +D++DKSVTENTR +YPI +I N   P    P  KNVI L+ DAFGVLP
Sbjct:  135 AWQAHFVTNMFIKPTAEELENF-EPDFVVYNASKAKVENYAELGLNSETCVAFNITSHEQVIINTWYGGEMKKGMFSMMNYYLPLKGIASMHCSANTDKNGENTAIFFGLSGTGKTTLSTDPKRLLIGDDEHGWDDNGVFNFEGGCYAKVINLDKDSEPDIYNAIKRNALLENVTLDENGK-IDFADKSVTENTRVSYPINHIENIVRPISSAPAAKNVIFLSADAFGVLP 363          
The following BLAST results are available for this feature:
BLAST of FC923660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_LEPBP7.586e-5447.83Phosphoenolpyruvate carboxykinase [ATP] OS=Leptosp... [more]
PCKA_LEPBA7.586e-5447.83Phosphoenolpyruvate carboxykinase [ATP] OS=Leptosp... [more]
PCKA_RHOPS9.888e-5447.48Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_BACTN1.163e-5349.78Phosphoenolpyruvate carboxykinase [ATP] OS=Bactero... [more]
PCKA_SILPO1.519e-5344.58Phosphoenolpyruvate carboxykinase [ATP] OS=Silicib... [more]
PCKA_SHEHH1.519e-5346.93Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_NITSB1.519e-5351.09Phosphoenolpyruvate carboxykinase [ATP] OS=Nitrati... [more]
PCKA_SHEPW1.984e-5347.37Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_SHEPA3.384e-5346.93Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_EUBE23.384e-5348.92Phosphoenolpyruvate carboxykinase [ATP] OS=Eubacte... [more]

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Properties
Property NameValue
Genbank descriptionC31707F01EF StrClemenN Citrus clementina cDNA clone C31707F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923660 ID=FC923660; Name=FC923660; organism=Citrus clementina; type=EST; length=742bp
AAGGGCTTACCATTCTTTGTTCATGCACAACATGTGTATCCGACCCACTC
CTGAAGAGCTGGAGAATTTCGGTACTCCGGACTTCACTATATGCAATGCT
GGACAGTTCCCGTGTAATCGTTATACTCACTACATGACATCCTCCACTAG
CATAGACCTTAATCTTGCTAGGAGGGAAATGGTCATCCTCGGCACACAGT
ACGCCGGGGAAATGAAGAAGGGTCTTTTCAGTGTTATGCATTATCTCATG
CCTAAACGTCAAATCCTCTCCCTTCATTCTGGCTGCAATATGGGAAAAGA
TGGAGATGTTGCCCTCTTCTTTGGATTGTCAGGTACTGGAAAGACAACAC
TGTCTACTGATCACAATCGATATCTGATTGGAGACGATGAACACTGTTGG
GGTGACAATGGTGTGTCAAACATTGAGGGTGGTTGCTATGCCAAGTGCAT
TGATCTCTCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTG
GCGCTGTGTTGGAAAATGTTGTGTTTGATGAGCATACCAGAGAGGTGGAT
TATTCTGACAAATCTGTCACAGAGAACACTCGTGCTGCCTACCCCATTGA
GTATATCCCCAATGCAAAGATACCATGCGTTGGTCCTCATCCCAAGAATG
TCATCCTTTTGGCATGTGATGCTTTTGGTGTACTCCCACAGTGAGCAAGC
TGAACCCTGGCACAACATGTACCATTTCATCAGTGGCTACAC
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