FC923663

Overview
NameFC923663
Unique NameFC923663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 70/148 (47.30%), Postives = 100/148 (67.57%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++T KW+GE +K   AVFSLA K+ PS++F+DE+DS L R  +  +HEA   MK +FM  WDGL T    +V+++ ATNRP DLD A++RR+P R  +N P+   R+ I+++IL  E + S V+L  IA   DG+SGSDL+ +C  AA
Sbjct:  165 TLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILRRMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAA 311          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.482e-34
Identity = 87/223 (39.01%), Postives = 128/223 (57.40%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPL---KMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            S+TSKW G+ EK VK +F++A+   P+++F+DEVDS+L +R +  E+E+  ++KNEF+++ DG  + ++ RVLV+ ATNRP +LDEAV RR  RRL V LP    R+KII  ++ + +   DV  +  +A + DGYSG+D+  LC  A+  P                     +P     ++   L    MDDFK A   +  SVSSE     E   WNE+YG
Sbjct:  318 SLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR-SANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAP-----------------LRSLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSSEDCKQFE--AWNEIYG 520          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 81/221 (36.65%), Postives = 135/221 (61.09%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ GEGEK V+A+F++A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M DGYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   + WN+ +G+
Sbjct:  375 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 578          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 81/221 (36.65%), Postives = 135/221 (61.09%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ GEGEK V+A+F++A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M DGYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   + WN+ +G+
Sbjct:  408 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 611          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 81/221 (36.65%), Postives = 135/221 (61.09%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ GEGEK V+A+F++A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M DGYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   + WN+ +G+
Sbjct:  410 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 613          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 79/221 (35.75%), Postives = 137/221 (61.99%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ GEGEK V+A+F++A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++  ++R+LV+ ATNRP +LD+AV+RR  +R+ V+LP+   R  +++ +L+K+    +  +L  +A M DGYSGSDL  L   AA  P                          S+ ++R +K+ DF  + +++  S+S ++  +   + WN+ +G+
Sbjct:  407 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIRELKPEQVKN--------------MSASEMRNIKLSDFTESLKKIKRSLSPQT--LEAYIRWNKDFGD 610          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 73/150 (48.67%), Postives = 108/150 (72.00%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ G+GEK V+A+F++A ++ PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +R++V+AATNRP +LDEA +RR P+R+ V LPD   RE ++R +L K+    SD DL  +A + +GYSGSDL  L   AA
Sbjct:  571 TLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSERSS-NEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAA 719          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 80/221 (36.20%), Postives = 135/221 (61.09%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ GEGEK V+A+F++A ++ PS++F+DEVDS+L R    GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A + DGYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   + WN+ +G+
Sbjct:  407 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLL-RERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 610          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 75/153 (49.02%), Postives = 105/153 (68.63%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL--AKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 455
            S+TSKW GEGEK V+A+FS+A    PSV+F+DE+DS+L  R    EHE+ R++K EF+V  DG+ T   ER+LVL ATNRP +LDEA  RR  +RL + LP+  +R +I+  +L   + E+ +D +LE I  + DGYSG+D++ LC  AA  P
Sbjct:  384 SLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSE-SEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIVENLLRGTRHEI-TDHNLEKIRRLTDGYSGADMRQLCTEAAMGP 534          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.595e-33
Identity = 86/224 (38.39%), Postives = 131/224 (58.48%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVD---VRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ GEGEK V+A+F++A ++ PS++F+DEVDS+L  R++  EHEA R++K EF+V +DGL T  +ERVLV+ ATNRP +LD+A +RR  +R+ V LPD   R  ++  +L K       D L+ +A + +GYSGSDL  L   AA  P                     +P     VD   +R + + DF  + ++V  SV+ +S +  +   WN  +G+
Sbjct:  442 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLSERKD-NEHEATRRLKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALRRFTKRVYVTLPDHNTRVILLEKLLKKHNNPLSADKLKYLARLTEGYSGSDLTALAKDAALGP-----------------IRELNPEQVRCVDPKKMRNISLQDFLDSLKKVRRSVTPQSLDFFD--RWNREFGD 645          
The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
ATD1B_DANRE1.443e-3447.30ATPase family AAA domain-containing protein 1-B OS... [more]
FIGL1_DROME5.482e-3439.01Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
SPAST_RAT9.351e-3436.65Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_MOUSE9.351e-3436.65Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN9.351e-3436.65Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_CHICK9.351e-3435.75Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
SPAST_ANOGA9.351e-3448.67Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
SPAST_PIG1.221e-3336.20Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
FIGL1_CAEBR1.221e-3349.02Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
SPAST_IXOSC1.595e-3338.39Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31707F04EF StrClemenN Citrus clementina cDNA clone C31707F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bp
CAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAAGCA
GTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGA
GGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTA
TGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACA
AAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGA
CCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACT
TGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAA
GAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGA
TGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATT
GTCCCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCA
TTGGCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCG
CCCTCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAA
GTGTATCATCAGAGTCTACAAATATGAATGAGCTCCTTNCATGGAATGAA
CTATATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTAT
GTAGA
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