FC923663

Overview
NameFC923663
Unique NameFC923663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32
Identity = 86/222 (38.74%), Postives = 129/222 (58.11%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEG-IANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ G+GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D  G +A + +GYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E   W++ YG+
Sbjct:  575 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRQITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 779          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.764e-32
Identity = 77/221 (34.84%), Postives = 135/221 (61.09%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ GEGEK V+A+FS+A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LD+AV+RR  +R+ V+LP+   R  +++ +L+K+    ++ +L  ++ + +GYSGSD+  L   AA  P                          ++ ++R +K  DF  + +++  SVS   + +   + WN+ +G+
Sbjct:  397 SLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKN--------------MAASEMRNIKYSDFLSSLKKIKCSVS--PSTLESYIRWNKEFGD 600          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.764e-32
Identity = 87/224 (38.84%), Postives = 131/224 (58.48%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA---DGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ G+GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +R++VLAATNRP +LDEA +RR  +R+ V+LP    RE ++  +L K+   S +D E +A +A   DGYSGSDL  L   AA  P                  N           +RP+   DF  + +++  SV+ +S N  E   W++ YG+
Sbjct:  562 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPGVQTRELLLSRLLQKQ--GSPLDTEALARLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 766          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.764e-32
Identity = 86/222 (38.74%), Postives = 128/222 (57.66%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ G+GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A   DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E   W++ YG+
Sbjct:  563 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITESDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 767          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.303e-32
Identity = 69/150 (46.00%), Postives = 100/150 (66.67%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 455
            +T KWFGE  K V A+F+LA K+ P+++F+DE+D+ L +R+   +HEAM ++K EFM  WDGL +  + RVLVL ATNRP D+DEA+ RR+P+   + LP+A  R KI+ + L K  L ++ D  G+ N   G SGS +K +C +A   P
Sbjct:  161 LTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRT-DHEAMAQIKAEFMSMWDGLLS-GQSRVLVLGATNRPADIDEAIRRRMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSALSVP 308          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.303e-32
Identity = 78/221 (35.29%), Postives = 134/221 (60.63%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ GEGEK V+A+FS+A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LD+AV+RR  +R+ V LP+   R  +++ +L+K+    S+ +L  ++ + +GYSGSD+  L   AA  P                          ++ ++R +K  DF  + +++  SVS   + +   + WN+ +G+
Sbjct:  394 SLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKN--------------MAASEMRNMKYSDFLGSLKKIKCSVS--HSTLESYIRWNQDFGD 597          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.303e-32
Identity = 67/153 (43.79%), Postives = 104/153 (67.97%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            S+TSK+ GE EK V+ +F +A   APS +F+DE+DS+  +R    EHEA R++K+E ++  DG+       +  + V+VLAATN P+D+DEA+ RRL +R+ + LP+   RE+++R+ L +  LA D+DL+ IA   DGYSG+D+ N+C  A+
Sbjct:  302 SLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDAS 454          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 83/224 (37.05%), Postives = 126/224 (56.25%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV++E IA   DGYSG+D+ N+C  A+                     N +   ++      P  M+DF+ A ++V  SVS+      E   W E +G
Sbjct:  278 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS----LMAMRRRIEGLTPEEIRNLSRDDMH-----MPTTMEDFEMALKKVSKSVSASDIEKYE--KWIEEFG 490          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 85/222 (38.29%), Postives = 128/222 (57.66%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            S+TSK+ G+GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL      AA  P                  N           +R +   DF  + +++  SV+ +S N  E   W++ YG+
Sbjct:  551 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTARPKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 66/148 (44.59%), Postives = 103/148 (69.59%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++SKW G+ EK V+ +F LA   APS++F+DE+D++ G+R N GEHEA R++K+EF+V  DG + K D  RV VLAATN P++LDEA+ RR  +R+ + LPD   R+K+I   +     + +++ + +A   +G+SG+D+ +LC TAA
Sbjct:  262 LSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEHEASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAA 409          
The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
SPAST_DROGR1.350e-3238.74Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_XENTR1.764e-3234.84Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_DROVI1.764e-3238.84Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
SPAST_DROAN1.764e-3238.74Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
YJNA_SCHPO2.303e-3246.00Uncharacterized AAA domain-containing protein C24B... [more]
SPAST_XENLA2.303e-3235.29Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
KTNA1_STRPU2.303e-3243.79Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
KTNA1_XENTR5.131e-3237.05Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
SPAST_DROSI8.752e-3238.29Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]
MEI1_CAEEL8.752e-3244.59Meiotic spindle formation protein mei-1 OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionC31707F04EF StrClemenN Citrus clementina cDNA clone C31707F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bp
CAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAAGCA
GTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGA
GGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTA
TGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACA
AAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGA
CCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACT
TGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAA
GAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGA
TGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATT
GTCCCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCA
TTGGCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCG
CCCTCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAA
GTGTATCATCAGAGTCTACAAATATGAATGAGCTCCTTNCATGGAATGAA
CTATATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTAT
GTAGA
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