FC923663

Overview
NameFC923663
Unique NameFC923663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 44/151 (29.14%), Postives = 79/151 (52.32%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 443
            +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + V+ ATNRP  LD A++R  R+ R++  +LPD   R  I R+      +   +  E I+ +    +G++L+++C  A
Sbjct:  279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTML-ELITQLDGF--DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEA 426          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 45/133 (33.83%), Postives = 77/133 (57.89%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 389
            +   + G+G K V+  F+LA + APS++F+DE+D++  +R   E  G+ E  R M  E +   DG   +   +V V+AATNR   LD A++R  RL R++   +P+   R +I+++   K  ++ DV+ E +A
Sbjct:  240 LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTML-ELLNQLDGF--QPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELA 369          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 49/153 (32.03%), Postives = 79/153 (51.63%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKER--VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE-KIIRVILAKEELASDVDLEGIANMAD-GYSGSDLKNLCVTA 443
            + + + GE E  V+ VF  A    P VVF DE+DS+  +R N G+    M ++ ++ +   DG+   ++    V V+ ATNRP  LD A++R  R  + L + + D   ++  I+  +  K  L  DV L+ +A      Y+G+DL  LC  A
Sbjct: 1099 LLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQLPLTYTGADLYALCSDA 1251          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 43/146 (29.45%), Postives = 81/146 (55.48%), Query Frame = 3
Query:   24 GEGEKYVKAVFSLASKIA---PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            GE E+ ++ +F  A + A   P+++F+DEVD++  +R +       R +  + +   DG+ + +K  ++ +AAT+RP  +D A+ R  R  R +++  P    R+ I+ ++++      DVD   +A++  GY G+DL  LC  AA
Sbjct:  267 GESEENLRKIFEKAREAACSGPALLFIDEVDALCPKRGHSNSAPENRVVA-QLLTLMDGIDSDNK--MVTVAATSRPDAIDPALRRPGRFDREVIIGTPTHKQRQAILEMMISNMPTDRDVDAAALADVTVGYVGADLTALCRDAA 409          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 49/153 (32.03%), Postives = 78/153 (50.98%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKER--VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE-KIIRVILAKEELASDVDLEGIA-NMADGYSGSDLKNLCVTA 443
            + + + GE E  V+ VF  A    P VVF DE+DS+  +R N G+    M ++ ++ +   DG+   D     V V+ ATNRP  LD A++R  R  + L + + D  +++ KI+  +  K  L   V L  +A  +   Y+G+D   LC  A
Sbjct: 1063 LLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGDDTSGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQLKILEALTRKFTLHPSVSLHSVAQQLPFTYTGADFYALCSDA 1215          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 46/151 (30.46%), Postives = 80/151 (52.98%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNL-PDAPNREKIIRVILAKEELASDVDLEGIA-NMADGYSGSDLKNLCVTA 443
            + + + GE EK ++ +F+ A +  P V+F DE+DS+   R N  +    M ++ ++ +   DG++      V ++ ATNRP  LD +++R  RL R L + +  +  N+ KI++ +  K  LA DVDL  +  N     +G+D   L   A
Sbjct:  988 LINMYIGESEKNIREIFNKARQAKPCVIFFDELDSLAPSRGNGADSGGVMDRVVSQLLAELDGMQKSSD--VFIIGATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENCPMNLTGADFYALASDA 1136          
The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
PRS7_YEAST1.716e-1129.1426S protease regulatory subunit 7 homolog OS=Sacch... [more]
PR6AA_XENLA3.823e-1133.8326S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PEX6_PENCH3.823e-1132.03Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
SPA5L_XENTR6.521e-1129.45Spermatogenesis-associated protein 5-like protein ... [more]
PEX6_GLOLA8.517e-1132.03Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
PEX6_DICDI8.517e-1130.46Peroxisomal biogenesis factor 6 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC31707F04EF StrClemenN Citrus clementina cDNA clone C31707F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bp
CAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAAGCA
GTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGA
GGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTA
TGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACA
AAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGA
CCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACT
TGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAA
GAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGA
TGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATT
GTCCCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCA
TTGGCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCG
CCCTCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAA
GTGTATCATCAGAGTCTACAAATATGAATGAGCTCCTTNCATGGAATGAA
CTATATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTAT
GTAGA
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