FC923663

Overview
NameFC923663
Unique NameFC923663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 81/218 (37.16%), Postives = 121/218 (55.50%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVR--PLKMDDFKYAHEQVCASVSSESTNMNE 632
            ++ SKW GE E+ V+ +F LA   APS +F+DE+DS+   R   GEHE+ R++K+E +V  DG+          ++ V+VLAATN P+D+DEA+ RRL +R+ + LPD  +R+ +I + L   E+ASDV++E +A   +GYSG DL N+C  A+                      R      S  D+   P+ M DF+ A  +V  SVSS     +E
Sbjct:  307 TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDAS----------MNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHE 514          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 79/220 (35.91%), Postives = 124/220 (56.36%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR-VILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            S+TSK+ G+GEK V+A+F++A+   PS++F+DE+DS+L  R +  E EA R++K E +V +DG RT   ERVLV+ ATNRP DLD+A +RRL +R+ V LP+   R +II+ +++ +    +   +  +A +  GYSG DL  LC  AA+ P                             ++  +   DF  + +Q+  SV+S+S    E   WN+ +G
Sbjct:  452 SLTSKYVGDGEKLVRALFAVATHFQPSIIFIDEIDSLLTERSS-NESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALRRLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQQINSLAEVTQGYSGFDLAALCKDAAYEPIRRLGIGIKDLELN---------------EISLISFKDFANSLKQIRPSVTSQSLKSFE--KWNQKFG 653          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 69/153 (45.10%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  278 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDAS 430          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 69/153 (45.10%), Postives = 103/153 (67.32%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV++E IA   DGYSG+D+ N+C  A+
Sbjct:  274 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS 426          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 67/154 (43.51%), Postives = 101/154 (65.58%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 455
            S+TSKW G+ EK ++ +F +A    PS++F+DE+DS+L  R    + E  R+MK EF+V +DG  +   +R+LV+ ATNRP++LD+AV+RR P+R+M+NLPD   R+++I   L K ++    S  D+  IA+   G+S SDL  LC  AA  P
Sbjct:  337 SLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEK-DAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLRRFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVP 489          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 70/153 (45.75%), Postives = 104/153 (67.97%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKE----RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DSM  RR    EHEA R++K E +V  DG+    D E     V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++R+ L + ELA+DVD+  IA  ++GYSG+D+ N+C  A+
Sbjct:  272 TLTSKYRGESEKLVRILFEMARFYAPTTIFIDEIDSMCSRRGTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDAS 424          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   +P+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  277 TLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   +P+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  277 TLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   +P+ +F+DE+DS+  RR    EHEA R+MK E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+
Sbjct:  277 TLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDAS 429          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 77/224 (34.38%), Postives = 128/224 (57.14%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----RTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+ GRR    EHEA R++K+E +V  DG+     ++D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + ++ASDVDL   A   +GYSG+D+ N+C  A+                     +             P+ M+DF+ A +++  SVS  + ++ +   W   +G
Sbjct:  274 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRALSKDELQ---------MPVTMEDFELALKKISKSVS--AADLEKYESWMSEFG 486          
The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
KTNA1_ARATH8.752e-3237.16Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
SPAST_DICDI1.493e-3135.91Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
KTNA1_CHICK1.493e-3145.10Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
KTNA1_XENLA1.950e-3145.10Katanin p60 ATPase-containing subunit (Fragment) O... [more]
SPAST_CAEBR3.326e-3143.51Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
KTNA1_SALSA3.326e-3145.75Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_MACFA3.326e-3144.44Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN3.326e-3144.44Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KTNA1_MOUSE4.344e-3144.44Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
KATL1_DANRE7.409e-3134.38Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31707F04EF StrClemenN Citrus clementina cDNA clone C31707F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bp
CAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAAGCA
GTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGA
GGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTA
TGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACA
AAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGA
CCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACT
TGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAA
GAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGA
TGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATT
GTCCCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCA
TTGGCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCG
CCCTCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAA
GTGTATCATCAGAGTCTACAAATATGAATGAGCTCCTTNCATGGAATGAA
CTATATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTAT
GTAGA
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