FC923663

Overview
NameFC923663
Unique NameFC923663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 71/149 (47.65%), Postives = 99/149 (66.44%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLEGIANMADGYSGSDLKNLCVTAA 446
            SI  KW+GE  K V A+FSLA+K+ P ++F+DE+DS L R  +  +HE    +K EFM  WDGL   +  RV+++ ATNR  D+D+A +RRLP+R +V+LP +  R KI+ V+L   +L  D  DL+ IA+   G+SGSDLK LC  AA
Sbjct:  161 SIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFL-RERSSTDHEVTATLKAEFMTLWDGL--LNNGRVMIIGATNRINDIDDAFLRRLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAA 306          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 67/153 (43.79%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   +P+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+
Sbjct:  277 TLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDAS 429          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 66/154 (42.86%), Postives = 99/154 (64.29%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV---DLEGIANMADGYSGSDLKNLCVTAAHCP 455
            S+TSKW G+ EK ++ +F +A    PS++F+DE+DS+L  R    + E  R+MK EF+V +DG  +   +R+LV+ ATNRP +LD+AV+RR P+R+M+NLPD   R+++I   L K  +   +   D+  IA+   G+S SDL  LC  AA  P
Sbjct:  307 SLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEK-DAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLRRFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVP 459          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 67/153 (43.79%), Postives = 103/153 (67.32%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  DV LE IA+  +GYSG+D+ N+C  A+
Sbjct:  274 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDAS 426          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 74/205 (36.10%), Postives = 119/205 (58.05%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL---EGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 608
            S+TSKW G+ EK V+A+F +A    P+++F+DE+DS+L  R N  E E  R+MK EF++  DG+ +   +R+LV+ ATNRP +LD A++RR P+R+++++P+A  R K+I  +L K + + D+ L   + +A    GYS SDL  LC  AA  P                  +R       S ++RP+ + DF+ A + +  S +
Sbjct:  247 SLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSILCER-NEKETEVSRRMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILRRFPKRILIDVPNAAARLKLIMSLLEKTKTSFDLGLTQRQILAEWTHGYSNSDLVALCREAAMVP--------------IRDLSRKDIKNLVSTELRPITLRDFEIAMKAIKPSTN 436          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30
Identity = 82/232 (35.34%), Postives = 128/232 (55.17%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVD-VRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGEGG 668
            S+TSK+ GE EK V+A+F+LA K++PS++FVDE+DS+L  R + G EHE  R++K EF++ W  L       +T D  RVLVLAATN P+ +D+A  RR  RR  + LPD   R   +  +L  ++ +  + D+E I    + YSGSDL  L   AA  P                  +     L++ ++ +RP+ +DDFK + + +  SV+ +   +     W++ +G  G
Sbjct:  527 SLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAAMGP----------------LRSLGESLLFTKMESIRPINLDDFKTSIKVIRPSVNLQ--GLERYSEWDKEFGSQG 740          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30
Identity = 63/144 (43.75%), Postives = 98/144 (68.06%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 434
            ++T KW+GE +K   AVFS+A K  P+++F+DE+DS L  R++  +HE+   MK +FM  WDG  +   ++++V+ ATNRP D+D A++RR+  R  V +P+A  R +I+ VIL  E++ + V+L  IA  A+G SGSDLK +C
Sbjct:  152 NLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSH-DHESTAMMKAQFMTLWDGFSSSG-DQIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVC 293          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30
Identity = 66/153 (43.14%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  274 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDAS 426          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 67/153 (43.79%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E +V  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  276 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDAS 428          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 66/153 (43.14%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  276 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428          
The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
MSP1_YEAST9.677e-3147.65Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
KTNA1_RAT1.264e-3043.79Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
SPAST_CAEEL1.651e-3042.86Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
KATL1_MOUSE2.156e-3043.79Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SPAST_BRUMA2.816e-3036.10Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
YKX4_SCHPO3.677e-3035.34Uncharacterized AAA domain-containing protein C328... [more]
MSP1_CAEEL3.677e-3043.75Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
KATL1_RAT3.677e-3043.14Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RABIT6.272e-3043.79Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN6.272e-3043.14Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31707F04EF StrClemenN Citrus clementina cDNA clone C31707F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bp
CAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAAGCA
GTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGA
GGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTA
TGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACA
AAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGA
CCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACT
TGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAA
GAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGA
TGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATT
GTCCCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCA
TTGGCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCG
CCCTCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAA
GTGTATCATCAGAGTCTACAAATATGAATGAGCTCCTTNCATGGAATGAA
CTATATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTAT
GTAGA
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