FC923663

Overview
NameFC923663
Unique NameFC923663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 66/153 (43.14%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  276 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 66/153 (43.14%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  276 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 80/242 (33.06%), Postives = 124/242 (51.24%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------------------KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA-KEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGEGGS 671
            S+TSK+ GE EK V+A+F++A K++PS++FVDE+DS++G R N  E+E+ R++KNEF+V W  L +                  +D  RVLVLAATN P+ +DEA  RR  RR  + LP+   R    + +L+ ++   ++ D + +  + +GYSGSD+ +L   AA  P                              +RP+ + DFK +   +  SVS +     E   W   +G  GS
Sbjct:  673 SLTSKYLGESEKLVRALFAIAKKLSPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARRRFVRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVKITEGYSGSDITSLAKDAAMGPLRDLGDKLLETEREM---------------IRPIGLVDFKNSLVYIKPSVSQDGLVKYE--KWASQFGSSGS 897          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/153 (43.14%), Postives = 101/153 (66.01%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  276 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 64/152 (42.11%), Postives = 102/152 (67.11%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K E +V  DG+         + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + +LA+DV+++ IA   +GYSG+D+ N+C  A+
Sbjct:  272 TLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDAS 423          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 82/235 (34.89%), Postives = 132/235 (56.17%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDK-----ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVD-VRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGEGGS 671
            S+ SK+ GE EK V+A+F +A K++PS++F+DE+DSML  R +  E+E+ R++K E ++ W  L     +++D+      RVLVL ATN P+ +D+A  RR  R+L + LPD   R   ++ ++AK++ +  D+D E I  M +G+SGSDL +L   AA  P                  +     +++  D +R +++ DF+ A   +  SVSSES    E   W+  +G  GS
Sbjct:  539 SLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSD-NENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEP----------------IRDLGDKLMFADFDKIRGIEIKDFQNALLTIKKSVSSESLQKYE--EWSSKFGSNGS 754          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 81/229 (35.37%), Postives = 123/229 (53.71%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVD-VRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            S+TSK+ G+ EK V+A+F +A +   SV+FVDE+DS+L  R + G EHE+ R++K EF++ W  L       +T    RVLVLAATN P+ +DEA  RR  +R  + LP+   R K +  +L  +    ++ DLE + N+ +GYSGSD+  L   AA  P                  N     L +S + + P+ ++ FK +   +  SVS E  +  E   WN+ +G
Sbjct:  447 SLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARRRFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAMGP----------------LRNLGDALLTTSAEMIPPISLNHFKASLRTIRPSVSQEGIHRYE--EWNKQFG 657          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 67/159 (42.14%), Postives = 100/159 (62.89%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL------AKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 455
            +I SKW G+ EK V+ +F LA   APS +F+DE++S++ +R     GEHE  R+MK E +V  DGL   D + V VLAA+N P++LD A++RRL +R++V+LP    R+ +I+  L      +  EL +D+D   +    DGYSGSD++ +C  AA  P
Sbjct:  326 TIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSD-DLVFVLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRP 483          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELASDVDLEGIANMADGYSGSDL 422
            + SKW GE E+ V+ +F +A +  PS++F+DE+DS+ G R + GE E+ R++K EF+V  +G+  KD+  VLVL ATN P+ LD A+ RR  +R+ + LP+A  R ++  + + K   EL S  D + +A M DGYSGSD+
Sbjct:  198 LVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSR-SEGESESSRRIKTEFLVQMNGV-GKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQ-DFKELAKMTDGYSGSDI 335          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_NEMVE (Spastin OS=Nematostella vectensis GN=v1g144095 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24
Identity = 72/208 (34.62%), Postives = 113/208 (54.33%), Query Frame = 3
Query:   39 YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-EELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            +VK++  LAS +  S+  +DEVDS+L  R   GEHE  R++K EF+V++DG+    +ER+LV+ ATNRP +LD+A +RR+ +R+ + LPD   R+ ++  +LAK     S  +++ +A M + YSGSDL  L   AA  P                  N       ++ +VR +   DF  + + +  SV  E+    +   WN LYG
Sbjct:  404 FVKSLEDLASILTTSLFTIDEVDSLLTERRE-GEHEHSRRLKTEFLVSFDGVVADPEERILVMGATNRPQELDDAALRRMVKRIHIPLPDKETRKVLLTKLLAKHHNPLSGAEIDRLARMTEHYSGSDLTALARDAALGP--------------IRDLNSDQLKSMAANEVRNITFQDFVNSLQIIRPSVGPETLKAYD--DWNRLYG 594          
The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
KATL1_OTOGA6.272e-3043.14Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN6.272e-3043.14Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SAP1_YEAST1.070e-2933.06Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]
KATL1_SORAR1.070e-2943.14Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KTNA1_DANRE1.397e-2942.11Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
TBP6_YEAST1.183e-2834.89Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SUR2_SCHPO3.442e-2835.37Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
KATL2_XENTR3.221e-2642.14Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4_SCHPO6.075e-2543.26Suppressor protein of bem1/bed5 double mutants OS=... [more]
SPAST_NEMVE2.309e-2434.62Spastin OS=Nematostella vectensis GN=v1g144095 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31707F04EF StrClemenN Citrus clementina cDNA clone C31707F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bp
CAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAAGCA
GTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGA
GGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTA
TGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACA
AAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGA
CCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACT
TGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAA
GAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGA
TGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATT
GTCCCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCA
TTGGCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCG
CCCTCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAA
GTGTATCATCAGAGTCTACAAATATGAATGAGCTCCTTNCATGGAATGAA
CTATATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTAT
GTAGA
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