FC923663

Overview
NameFC923663
Unique NameFC923663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 455
            +I SKW G+ EK V+ +F LA   APS +F+DE++S++ +R   + GEHE   +MK E +V  DGL  + ++ V VLAA+N P++LD A++RRL +R++V+LP    R+ +I   L         EL ++++   ++   +GYSGSD+K +C  AA  P
Sbjct:  322 TIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRP 479          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 57/140 (40.71%), Postives = 88/140 (62.86%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422
            + SKW GE EK VK +F LA +  PS++F+DE+DS+ G R +  E EA R++K EF+V   G+   D + +LVL ATN P+ LD A+ RR  +R+ + LP+A  R  + R+ L + +   ++ D + +    DGYSG+D+
Sbjct:  204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADI 341          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            + SKW GE EK ++  F  A ++AP+V+F DE+DS+   R   G +    ++ N+ +   DGL  ++ E V+V+AATNRP  +D A++R  R  R + V  P    RE+I+++      LA+DV L  +A  ADGY GSDL N+   AA
Sbjct:  532 LLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGL--EEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAERADGYVGSDLANIAREAA 678          

HSP 2 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 66/221 (29.86%), Postives = 115/221 (52.04%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            I SK++GE E+ ++ +F  A   +PS++F+DE+DS+  +RE+  GE E  R++  + +   DGL  + + +V+V+AATNR   +D A+ R  R  R + + +PD   RE+I+++      L+ DV+L  +A+   G+ G+D+++L   AA                         PP  S +D   +K +DFK A  +V  S   E       + W+++ G
Sbjct:  259 IISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDVTGEVE--RRVVAQLLTMMDGL--EGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGADIESLSKEAA-------MRALRRYLPEIDLDEEDIPP--SLIDRMIVKREDFKGALSEVEPSAMREVLVELPKITWDDVGG 466          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 63/159 (39.62%), Postives = 98/159 (61.64%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 455
            +I SKW G+ EK V+ +F LA   APS +F+DE++S++ +R     GEHE   +MK E +V  DGL  + ++ V VLAA+N P++LD A++RRL +R++V+LP    R+ +I   L         EL + ++   ++   +GYSGSD+K +C  AA  P
Sbjct:  323 TIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRP 480          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 55/145 (37.93%), Postives = 92/145 (63.45%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 434
            + SKW GE EK+V+ +F  A ++AP V+F DE+DS+  RR   G+     ++ ++ +   DGL  ++ + V+V+AATNRP  +D A++R  RL R + +  PD   R +I ++ L  + LA DV++E +A   +GYSG+D++ +C
Sbjct:  525 LLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGL--EELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVC 667          

HSP 2 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 59/150 (39.33%), Postives = 94/150 (62.67%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            I SK++GE E+ ++ +F  A + APS++F+DE+DS+  +RE   GE E  R++  + +   DGL  +    V+V+AATNRP  +D A+ R  R  R + + +PD   R++I+ +   K  LA DVDLE +A + +G+ G+DL+ LC  AA
Sbjct:  252 IMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEVE--RRVVAQLLALMDGLEARGD--VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAA 397          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV-------ILAKEELASDVDLEGIANMADGYSGSDL 422
            + SKW GE EK VK +F++A +  PS++F+DEVD++ G R   GE EA R++K E +V  +G+   D + VLVL ATN P+ LD A+ RR  RR+ + LPD   R  +  +       +L KE      D   +  M +GYSGSD+
Sbjct:  202 LVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-GEGESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDI 339          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422
            + SKW GE EK VK +F LA +  PS++F+DE+DS+ G R +  E EA R++K EF+V   G+   D + +LVL ATN P+ LD A+ RR  +R+ + LP+A  R  + ++ L   +   ++ D   +    +GYSG+D+
Sbjct:  204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADI 341          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422
            + SKW GE EK VK +F LA +  PS++F+DEVDS+ G R N  E EA R++K EF+V   G+   + +  LVL ATN P+ LD A+ RR  +R+ + LP+   R ++ R+ L +     +D ++  +A   +GYSG+D+
Sbjct:  197 LMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI 334          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422
            + SKW GE EK VK +F LA +  PS++F+DEVDS+ G R N  E EA R++K EF+V   G+   + +  LVL ATN P+ LD A+ RR  +R+ + LP+   R ++ R+ L +     +D ++  +A   +GYSG+D+
Sbjct:  197 LMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI 334          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422
            + SKW GE EK VK +F LA +  PS++F+DEVDS+ G R N  E EA R++K EF+V   G+   + +  LVL ATN P+ LD A+ RR  +R+ + LP+   R ++ R+ L +     +D ++  +A   +GYSG+D+
Sbjct:  197 LMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI 334          
The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
KATL2_HUMAN8.773e-2439.62Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4B_MOUSE1.954e-2340.71Vacuolar protein sorting-associated protein 4B OS=... [more]
CDCH_HALSA2.552e-2339.60Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
KATL2_MOUSE4.354e-2339.62Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
Y1297_ARCFU7.427e-2337.93Cell division cycle protein 48 homolog AF_1297 OS=... [more]
VPS4_YEAST1.267e-2241.10Vacuolar protein sorting-associated protein 4 OS=S... [more]
VPS4B_BOVIN2.161e-2239.29Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4A_RAT2.822e-2240.71Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE2.822e-2240.71Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN2.822e-2240.71Vacuolar protein sorting-associated protein 4A OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31707F04EF StrClemenN Citrus clementina cDNA clone C31707F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bp
CAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAAGCA
GTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGA
GGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTA
TGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACA
AAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGA
CCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACT
TGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAA
GAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGA
TGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATT
GTCCCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCA
TTGGCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCG
CCCTCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAA
GTGTATCATCAGAGTCTACAAATATGAATGAGCTCCTTNCATGGAATGAA
CTATATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTAT
GTAGA
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