FC923663
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3) HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24 Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3 Query: 3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 455 +I SKW G+ EK V+ +F LA APS +F+DE++S++ +R + GEHE +MK E +V DGL + ++ V VLAA+N P++LD A++RRL +R++V+LP R+ +I L EL ++++ ++ +GYSGSD+K +C AA P Sbjct: 322 TIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRP 479
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23 Identity = 57/140 (40.71%), Postives = 88/140 (62.86%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422 + SKW GE EK VK +F LA + PS++F+DE+DS+ G R + E EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R+ + LP+A R + R+ L + + ++ D + + DGYSG+D+ Sbjct: 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADI 341
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23 Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446 + SKW GE EK ++ F A ++AP+V+F DE+DS+ R G + ++ N+ + DGL ++ E V+V+AATNRP +D A++R R R + V P RE+I+++ LA+DV L +A ADGY GSDL N+ AA Sbjct: 532 LLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGL--EEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAERADGYVGSDLANIAREAA 678 HSP 2 Score: 87.8113 bits (216), Expect = 6.089e-17 Identity = 66/221 (29.86%), Postives = 115/221 (52.04%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659 I SK++GE E+ ++ +F A +PS++F+DE+DS+ +RE+ GE E R++ + + DGL + + +V+V+AATNR +D A+ R R R + + +PD RE+I+++ L+ DV+L +A+ G+ G+D+++L AA PP S +D +K +DFK A +V S E + W+++ G Sbjct: 259 IISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDVTGEVE--RRVVAQLLTMMDGL--EGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGADIESLSKEAA-------MRALRRYLPEIDLDEEDIPP--SLIDRMIVKREDFKGALSEVEPSAMREVLVELPKITWDDVGG 466
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23 Identity = 63/159 (39.62%), Postives = 98/159 (61.64%), Query Frame = 3 Query: 3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 455 +I SKW G+ EK V+ +F LA APS +F+DE++S++ +R GEHE +MK E +V DGL + ++ V VLAA+N P++LD A++RRL +R++V+LP R+ +I L EL + ++ ++ +GYSGSD+K +C AA P Sbjct: 323 TIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRP 480
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23 Identity = 55/145 (37.93%), Postives = 92/145 (63.45%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 434 + SKW GE EK+V+ +F A ++AP V+F DE+DS+ RR G+ ++ ++ + DGL ++ + V+V+AATNRP +D A++R RL R + + PD R +I ++ L + LA DV++E +A +GYSG+D++ +C Sbjct: 525 LLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGL--EELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVC 667 HSP 2 Score: 103.605 bits (257), Expect = 1.072e-21 Identity = 59/150 (39.33%), Postives = 94/150 (62.67%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446 I SK++GE E+ ++ +F A + APS++F+DE+DS+ +RE GE E R++ + + DGL + V+V+AATNRP +D A+ R R R + + +PD R++I+ + K LA DVDLE +A + +G+ G+DL+ LC AA Sbjct: 252 IMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEVE--RRVVAQLLALMDGLEARGD--VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAA 397
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22 Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV-------ILAKEELASDVDLEGIANMADGYSGSDL 422 + SKW GE EK VK +F++A + PS++F+DEVD++ G R GE EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR+ + LPD R + + +L KE D + M +GYSGSD+ Sbjct: 202 LVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-GEGESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDI 339
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22 Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422 + SKW GE EK VK +F LA + PS++F+DE+DS+ G R + E EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R+ + LP+A R + ++ L + ++ D + +GYSG+D+ Sbjct: 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADI 341
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22 Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422 + SKW GE EK VK +F LA + PS++F+DEVDS+ G R N E EA R++K EF+V G+ + + LVL ATN P+ LD A+ RR +R+ + LP+ R ++ R+ L + +D ++ +A +GYSG+D+ Sbjct: 197 LMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI 334
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22 Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422 + SKW GE EK VK +F LA + PS++F+DEVDS+ G R N E EA R++K EF+V G+ + + LVL ATN P+ LD A+ RR +R+ + LP+ R ++ R+ L + +D ++ +A +GYSG+D+ Sbjct: 197 LMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI 334
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22 Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 3 Query: 6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422 + SKW GE EK VK +F LA + PS++F+DEVDS+ G R N E EA R++K EF+V G+ + + LVL ATN P+ LD A+ RR +R+ + LP+ R ++ R+ L + +D ++ +A +GYSG+D+ Sbjct: 197 LMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI 334 The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 346
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bpback to top |