FC923663

Overview
NameFC923663
Unique NameFC923663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 52/150 (34.67%), Postives = 90/150 (60.00%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 449
            + + WFGE E  V+ +F  A   +P ++F DE+DS+   R +   ++A  ++ N+ +   DG+   +K+ + ++AATNRP  LD+A+ R  RL + + ++LPD  +R  I + IL    L  DVD+  +A   +G+SG+D+ NLC +A +
Sbjct: 1004 LLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGIN--EKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKRTEGFSGADITNLCQSAVN 1151          

HSP 2 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            I SK  GE E+ ++ +F  AS+  P ++F+DE+DS+  +R     +E  +++ ++ +   DGL  K    VLVLAATNRP  +D A+ R  R  R + + +PD   R +I+     K +L  DV+L  IA    GY G+DL  LC  AA
Sbjct:  597 IMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSK-SNNELEKRVVSQLLTLMDGL--KKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKECHGYVGADLAQLCFEAA 742          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422
            + SKW GE EK VK +F LA +  PS++F+DE+DS+ G R +  E EA R++K EF+V   G+   D + +LVL ATN P+ LD A+ RR  +R+ + LP+   R  + ++ L   +   ++ D   +    DGYSG+D+
Sbjct:  204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADI 341          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 58/151 (38.41%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV-ILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 455
            I +KW G+ EK VK +F +A +   SV+F+DEVDS+   R N  E E+ R++K EF++  +G+   D + +LVLAATN P+ LD A+ RR  +R+ + LP+   R K+ ++ I +        D + +A++ +GYSGSD+ +L   A   P
Sbjct:  204 IVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSR-NDQESESARRIKTEFLIQMNGV-GNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQP 352          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 422
            + SKW GE EK VK +F LA +  PS++F+DE+DS+ G R +  E EA R++K EF+V   G+   D + +LVL ATN P+ LD A+ RR  +R+ + LP+   R  + ++ L   +   ++ D   +    DGYSG+D+
Sbjct:  204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMRGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADI 341          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 54/145 (37.24%), Postives = 86/145 (59.31%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 434
            + SKW GE EK ++ +F  A ++AP++VF+DE+DS+  RR    +     ++ N+ + + DG+   +   V+V+ ATNRP  +D A++R  R  + + +  PD   R  I++V      LA DVDL  IA   +GY G+DL+NLC
Sbjct:  537 VLSKWVGESEKAIREIFKKAKQVAPAIVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDGIEVMN--GVVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEGYVGADLENLC 679          

HSP 2 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 48/149 (32.21%), Postives = 86/149 (57.72%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRV-----ILAKEELASDVDLEGIANMADGYSGSDLKNL 431
            I SK++G+ E+ ++ +FS A + APS++F+DE+DS+  +RE   + E  R++  + +   DG+  K++  V+V+ ATNR   +D A+ R  R  R + + +PD   R++I+ +      L   E   +  LE +A+   G+ G+DL  L
Sbjct:  260 IMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREEV-QGEVERRVVAQLLTLMDGM--KERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNGRKEILMIHTRNMPLGMSEEEKNKFLEEMADYTYGFVGADLAAL 405          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 63/223 (28.25%), Postives = 117/223 (52.47%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSV----DVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            + +KW GE EK + A F +A    PSV+FV ++D +L  + N  EH  + +M+ EF++  D + T  +++++V+ AT++P ++DE++ R   +RL++ LPD+  R +II  +L++     +D +   +    +G+SG D+ +LC  A   P                    A P    S      +RP+   DF+ A  ++  S+S +  +M   + WN+++G
Sbjct:  555 LVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNE-EHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAVVGPL------------------HAMPATDLSAIMPSQLRPVTYQDFENAFCKIQPSISQKELDM--YVEWNKMFG 756          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 64/220 (29.09%), Postives = 114/220 (51.82%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            ++ +KW GEGEK V+A F +A    PSVVF+ +VD +L  + +  E   + ++K+E ++  DG+ +  +E VLV+ +T++P ++DE++ R   +RL+V LPDA  R +II  +L++     SD ++  +    DG+SG D+  LC  A   P                              +RP+   DF+    ++  S+S +   ++    WN+++G
Sbjct:  532 ALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLLLSSQLS--EESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRRYFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEALVGPLHGMPGADLSGMIPG--------------QMRPVSYQDFENVFCKIQPSISQK--ELDTYTEWNKMFG 733          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 63/223 (28.25%), Postives = 117/223 (52.47%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSV----DVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYG 659
            + +KW GE EK + A F +A    PSV+FV ++D +L  + +  EH  + +M+ EF++  D + T  +++++V+ AT++P ++DE++ R   +RL++ LPD+  R +II  +L +     +D +   +    +G+SG D+ +LC  AA  P                    A P    S      +RP+   DF+ A  ++  S+S +  +M   + WN+++G
Sbjct:  555 LVAKWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVSE-EHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPLPDSTARHQIIVQLLTQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGPL------------------HAMPATDLSAIMPSQLRPVTYQDFENAFCKIQPSISQKELDM--YVEWNKMFG 756          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 60/149 (40.27%), Postives = 88/149 (59.06%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            I SK  GE E  ++  F  A K +P+++F+DE+DS+  +RE     E  R++ ++ +   DG+  K +  V+V+AATNRP  +D A+ R  R  R + V +PD   R +I+R+     +LA DVDLE IA    GY GSDL +LC  AA
Sbjct:  294 IMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNG-EVERRVVSQLLTLMDGM--KARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAA 439          

HSP 2 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML-GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 425
            + S WFGE E  V+ +F  A   AP VVF+DE+DS+   R  + G+     ++ N+ +   DG+ +  K+ V V+ ATNRP  +D A++R  RL + + V LPD   R  I++  L    +A DVDL  +A    G+SG+DL+
Sbjct:  567 LLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNS--KKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLE 707          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 55/149 (36.91%), Postives = 89/149 (59.73%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            I SKW GE EK ++ +F  A + AP ++F DE+D++  +R          K+ N+ +   DG+  ++ + V+V+AATNRP  +D A++R  RL R ++V +PD   R  I ++      LA DV+LE +A   +GY+G+D++ LC  AA
Sbjct:  522 IFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGM--EEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEALCREAA 668          

HSP 2 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 54/149 (36.24%), Postives = 92/149 (61.74%), Query Frame = 3
Query:    6 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            I SK+ GE E+ ++ +F  A + APS++F+DE+D++  +R+     E  R++  + +   DGL  K + +V+V+ ATNRP  LD A+ R  R  R +++ +PD   R++I+++      LA DVDL+ +A++  G+ G+DL  LC  AA
Sbjct:  249 IMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDE-ATGEVERRLVAQLLTLMDGL--KGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVGADLAALCKEAA 394          
The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
CDAT_PLAF72.822e-2234.67Putative cell division cycle ATPase OS=Plasmodium ... [more]
VPS4B_HUMAN3.686e-2239.29Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4_DICDI6.287e-2238.41Vacuolar protein sorting-associated protein 4 OS=D... [more]
VPS4B_PONAB6.287e-2239.29Vacuolar protein sorting-associated protein 4B OS=... [more]
VAT_THEAC6.287e-2237.24VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]
FIGN_HUMAN1.401e-2128.25Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]
FIGN_DANRE1.401e-2129.09Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
FIGN_MOUSE2.389e-2128.25Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]
CDC48_SCHPO5.322e-2140.27Cell division cycle protein 48 OS=Schizosaccharomy... [more]
Y1156_METJA9.078e-2136.91Cell division cycle protein 48 homolog MJ1156 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC31707F04EF StrClemenN Citrus clementina cDNA clone C31707F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bp
CAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAAGCA
GTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGA
GGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTA
TGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACA
AAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGA
CCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACT
TGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAA
GAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGA
TGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATT
GTCCCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCA
TTGGCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCG
CCCTCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAA
GTGTATCATCAGAGTCTACAAATATGAATGAGCTCCTTNCATGGAATGAA
CTATATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTAT
GTAGA
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