FC923718

Overview
NameFC923718
Unique NameFC923718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.333e-60
Identity = 113/190 (59.47%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G GVM  D  SRF +NG+P+YH+MG STFS+YTVV +VS+AKI+PQA  ++VCLLGCGV TG+GAV NTAKV+ G  VAVFGLG +              R+  ID +P KF+ AK FG T+ +NP D+DKP+QQVLV++T  GVD++FECIGNV+VMR+ALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKGVMP-DATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGGIGLAVVQGARQAKAGRIFAIDTNPSKFELAKQFGATDCINPNDYDKPVQQVLVEMTKWGVDHTFECIGNVNVMRSALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.333e-60
Identity = 111/189 (58.73%), Postives = 137/189 (72.49%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            ++N+C  +R  T  GVM+ D KSRFSI GKPIYHF+GTSTFS+YTV+H   VAKI+P+APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IG+D++  +F+ A+ FG TEFVNPKDH KP+QQVL D+T+GGVD S EC GNV+ M  A EC H GWG +V+VGV
Sbjct:  109 ESNMCDLLRINTDRGVMIGDGKSRFSIGGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGISTGLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNAVRFEEARKFGCTEFVNPKDHTKPVQQVLADMTNGGVDRSVECTGNVNAMIQAFECVHDGWGVAVLVGV 297          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.741e-60
Identity = 112/190 (58.95%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 1.741e-60
Identity = 112/190 (58.95%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.741e-60
Identity = 112/190 (58.95%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.741e-60
Identity = 112/190 (58.95%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.741e-60
Identity = 112/190 (58.95%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.741e-60
Identity = 112/190 (58.95%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.741e-60
Identity = 107/189 (56.61%), Postives = 139/189 (73.54%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            ++N+C  +R  T  GVM+ND KSRFSI G+P++HF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK +PGS VA+FGLG V             SR+IG+D+   +F+ AK FGV EFVNPK+HDKP+QQV+ ++T+GGVD + EC G++  M +A EC H GWG +V+VGV
Sbjct:  110 ESNMCDLLRINTDRGVMLNDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKEHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGV 298          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.273e-60
Identity = 115/191 (60.21%), Postives = 141/191 (73.82%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 575
            KTNLC K+R   G GVM  D  +RF+  GK ++HFMG STFS++TVV ++S+AK++P+A LDKVCLLGCG+ TG GA  NTA VE GS  AV+GLG V             +R+IGIDI+  KF+  K FG+TEFVNPK   K +Q+VL ++TD GVD++FECIGNV VMRAALE CHKGWGTSVIVGVAA
Sbjct:  109 KTNLCQKIRVTQGKGVMP-DGTTRFTCKGKEVFHFMGCSTFSEFTVVAEISIAKVNPKAALDKVCLLGCGISTGYGAALNTAAVEKGSNCAVWGLGAVGLAVAMGCKAAGAARIIGIDINESKFEIGKKFGITEFVNPKKFCKSVQKVLGEMTDVGVDFTFECIGNVGVMRAALESCHKGWGTSVIVGVAA 298          
The following BLAST results are available for this feature:
BLAST of FC923718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
FRMA_PASPI1.333e-6059.47S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADH1_HORVU1.333e-6058.73Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]
FRMA_SHISS1.741e-6058.95S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOLI1.741e-6058.95S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC1.741e-6058.95S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS1.741e-6058.95S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO571.741e-6058.95S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO241.741e-6058.95S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1_PEA1.741e-6056.61Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
ADHX_OCTVU2.273e-6060.21Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]

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Properties
Property NameValue
Genbank descriptionC31708B12EF StrClemenN Citrus clementina cDNA clone C31708B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923718 ID=FC923718; Name=FC923718; organism=Citrus clementina; type=EST; length=577bp
GAAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTC
ATGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTA
TCACTTCATGGGAACCTCAACATTTAGCCAGTACACAGTTGTGCATGATG
TTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACAAAGTATGCCTT
CTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGGAACACTGCAAA
AGTAGAGCCGGGTTCTATAGTTGCTGTTTTTGGCCTTGGGACTGTTGGCC
TTGCTGTGGCAGAGGGTGCAAAGGCAGCTGGAGCTTCACGTGTTATTGGT
ATAGATATTGACCCAAAAAAGTTTGATAGAGCAAAGAATTTTGGAGTTAC
TGAATTTGTAAATCCCAAGGACCATGACAAACCCATTCAGCAGGTCCTTG
TCGATCTCACGGATGGTGGTGTTGACTATAGTTTTGAATGCATTGGCAAT
GTCTCTGTGATGAGGGCAGCTTTGGAATGCTGTCACAAGGGCTGGGGAAC
ATCAGTTATTGTGGGTGTTGCTGCATC
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