FC923718

Overview
NameFC923718
Unique NameFC923718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.065e-60
Identity = 111/190 (58.42%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKF+ A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.065e-60
Identity = 111/190 (58.42%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKF+ A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.065e-60
Identity = 111/190 (58.42%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKF+ A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.065e-60
Identity = 111/190 (58.42%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKF+ A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.128e-59
Identity = 111/190 (58.42%), Postives = 140/190 (73.68%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+P   VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  102 KTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPDDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.128e-59
Identity = 112/190 (58.95%), Postives = 136/190 (71.58%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC K+R   G G MM D  SR +  GK +YHFMG STFS+Y VV D+S+ ++ P+AP D+VCLLGCGV TG GA  NTAKVEPGS  A+FGLG V             SR+I ID +P KF++A+ FG T+ V P   DKPI QVL ++TDGG+DY+FEC+GNV +MRAALE CHKGWG SVI+GVA
Sbjct:  109 KTNLCQKIRVTQGKG-MMPDGTSRLTCRGKSLYHFMGASTFSEYAVVADISLCRVAPEAPPDRVCLLGCGVSTGYGAPLNTAKVEPGSTCAIFGLGAVGLAAIMGCRVAGASRIIAIDRNPDKFEKARIFGATDCVVPDASDKPISQVLGEMTDGGLDYTFECVGNVGIMRAALESCHKGWGVSVILGVA 297          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH3_HORVU (Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.128e-59
Identity = 105/189 (55.56%), Postives = 140/189 (74.07%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            ++NLC  +R     GVM+ D +SRF+INGKPI+HF+GTSTFS+YTV+H   +AKI+P+APLDKVC+L CG+ TGLGA  N AK + GS VA+FGLG V             SR+IG+D++P K+++AK FG T+FVNPKDH KP+Q+VLV++T+GGVD + EC G++  M A  EC H GWG +V+VGV
Sbjct:  109 ESNLCDLLRINVDRGVMIGDGQSRFTINGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCVLSCGLSTGLGATLNVAKPKKGSTVAIFGLGAVGLAAMEGARMAGASRIIGVDLNPAKYEQAKKFGCTDFVNPKDHTKPVQEVLVEMTNGGVDRAVECTGHIDAMIATFECVHDGWGVAVLVGV 297          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.514e-59
Identity = 109/189 (57.67%), Postives = 136/189 (71.96%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            ++N+C  +R  T  GVM++D KSRFSI GKPIYHF+GTSTFS+YTVVH   +AKI+P APLDKVCLL CG+ TGLGA  N AK + GS VAVFGLG V             SR+IG+D+   +F+ AK FGVTEFVNPK H+KP+Q+V+ +LT+ GVD S EC G+   M +A EC H GWG +V+VGV
Sbjct:  110 ESNMCDLLRINTDRGVMLSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFGVTEFVNPKAHEKPVQEVIAELTNRGVDRSIECTGSTEAMISAFECVHDGWGVAVLVGV 298          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.287e-59
Identity = 119/193 (61.66%), Postives = 134/193 (69.43%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNP-KD--HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC K+R   G G  M D  +RF   GK I+HFMGTSTFSQYTV+ ++S   +   APLDKVCLLGCG+ TG GA   TAKVE GS VA+FGLG V              R+IGID +  KF   K+FG TEF+NP KD    K IQQ LVD+TDGGVDYSFECIGNV+VMRAALECCHKGWG S IVGVA
Sbjct:  109 KTNLCSKIRITQGKG-QMPDGTTRFKCKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKVCLLGCGITTGFGAAKITAKVEEGSTVAIFGLGAVGLSVAQGAVDCGAKRIIGIDNNETKFGPGKDFGCTEFINPSKDLPEGKTIQQHLVDITDGGVDYSFECIGNVNVMRAALECCHKGWGVSTIVGVA 300          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 9.551e-59
Identity = 115/192 (59.90%), Postives = 140/192 (72.92%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKD-HDK-PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 572
            KTNLC K+R   GAGVM  +  SR S  G+ ++HFMGTSTF++YTVV D+S+ KI+ +APL+KVCLLGCG+ TG GA  NTAKVE GS  AV+GLG V              ++ GIDI+P KF+ AK FG T+FVNPKD  DK  IQ  L+DLTDGG DY+FECIGNV+ MR+ALE  HKGWGTSV++GVA
Sbjct:  110 KTNLCQKIRLTQGAGVMP-EGTSRLSCKGQQLFHFMGTSTFAEYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVEAGSTCAVWGLGAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVADKGSIQNYLIDLTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVA 300          
The following BLAST results are available for this feature:
BLAST of FC923718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
FRMA_ECOUT5.065e-6058.42S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL65.065e-6058.42S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL55.065e-6058.42S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOK15.065e-6058.42S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOSM1.128e-5958.42S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADHX_MYXGL1.128e-5958.95Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADH3_HORVU1.128e-5955.56Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3... [more]
ADH_MALDO2.514e-5957.67Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADHX_DICDI4.287e-5961.66Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]
ADHX_DROME9.551e-5959.90Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionC31708B12EF StrClemenN Citrus clementina cDNA clone C31708B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923718 ID=FC923718; Name=FC923718; organism=Citrus clementina; type=EST; length=577bp
GAAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTC
ATGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTA
TCACTTCATGGGAACCTCAACATTTAGCCAGTACACAGTTGTGCATGATG
TTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACAAAGTATGCCTT
CTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGGAACACTGCAAA
AGTAGAGCCGGGTTCTATAGTTGCTGTTTTTGGCCTTGGGACTGTTGGCC
TTGCTGTGGCAGAGGGTGCAAAGGCAGCTGGAGCTTCACGTGTTATTGGT
ATAGATATTGACCCAAAAAAGTTTGATAGAGCAAAGAATTTTGGAGTTAC
TGAATTTGTAAATCCCAAGGACCATGACAAACCCATTCAGCAGGTCCTTG
TCGATCTCACGGATGGTGGTGTTGACTATAGTTTTGAATGCATTGGCAAT
GTCTCTGTGATGAGGGCAGCTTTGGAATGCTGTCACAAGGGCTGGGGAAC
ATCAGTTATTGTGGGTGTTGCTGCATC
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